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    17 repositories

    • JAL2_subgoal_pipeline

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•1•0•Updated Sep 17, 2026Sep 17, 2026

    • CricketHuntVR

      Public
      A closed-loop VR environment for the study of hunting behaviour in mice.
      C#
      •0•1•4•1•Updated Jun 30, 2025Jun 30, 2025

    • Mini2p

      Public
      PowerShell
      •0•0•0•0•Updated Sep 5, 2023Sep 5, 2023

    • LocomotionControl

      Public
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated May 4, 2023May 4, 2023

    • vgatPAG

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Sep 29, 2022Sep 29, 2022

    • Kino

      Public
      2D animal locomotion kinematics
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 9, 2021Dec 9, 2021

    • imgreg2D

      Public
      2D image registration in python, using napari.
      image-processingaffineimage-registration
      image-processingaffineimage-registrationnapari2d-image
      Python
      •
      MIT License
      •2•16•0•2•Updated Dec 7, 2021Dec 7, 2021

    • Common-Coordinate-Behaviour

      Public
      Behavioural arena alignment and fisheye correction
      Python
      •
      MIT License
      •1•3•1•0•Updated May 8, 2021May 8, 2021

    • escape-analysis

      Public
      analysis of escape trajectories
      Python
      •
      MIT License
      •0•2•0•0•Updated May 8, 2021May 8, 2021

    • Behaviour

      Public
      Collection of shared utilities to process and analyse behaviour data
      Python
      •0•4•0•0•Updated Dec 8, 2020Dec 8, 2020

    • Fiberphotometry

      Public
      Python
      •0•2•1•0•Updated Oct 28, 2020Oct 28, 2020

    • escape-visualization

      Public
      DLC tracking, video registration, escape video rendering
      Python
      •
      MIT License
      •0•4•0•0•Updated Sep 14, 2020Sep 14, 2020

    • FC_analysis

      Public
      Fede's analysis code, all things tracking, plotting and modelling
      Python
      •1•0•0•0•Updated Aug 24, 2020Aug 24, 2020

    • tdmstovideo_converter

      Public
      Python
      •1•1•1•1•Updated Feb 10, 2020Feb 10, 2020

    • injectionsitefinder

      Public
      Python
      •0•1•0•0•Updated Feb 3, 2020Feb 3, 2020

    • VisualStimuli

      Public
      Testing python psychopy to generate visual stimuli (e.g. gratings, looms, flashes..)
      Python
      •0•3•0•0•Updated Nov 13, 2019Nov 13, 2019

    • Mantis_PythonComms

      Public
      Code for Mantis and Python to talk to each other
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 3, 2018Sep 3, 2018
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