_quarto.yml

project:
  type: website
  output-dir: _site
  execute-dir: project
  render:
    - "**/*.qmd"
    - "**/*.ipynb"
    - "**/*.md"
    - "!SKILL.md"
  resources:
    - "files/*.csv"
    - "files/*.json"
    - "files/mcp/*"
    - "bizard-skill.zip"
    - "llms.txt"
    - "images/gallery/**"
    - "images/Hiplot/**"
    - "images/Omics/**"

execute:
  freeze: auto  # never re-render during project render

website:
  favicon: images/favicon.ico
  page-navigation: true
  title: "A Biomedical Visualization Atlas"
  site-url: "https://openbiox.github.io/Bizard/"
  repo-url: https://github.com/openbiox/Bizard
  repo-actions:
    - source
    - issue

  page-footer:
    left: "&copy; CC-By-NC, Bizard Collaboration Group, <a href=\"https://genaimed.org/\" target=\"_blank\" rel=\"noopener\">Luo Lab</a>, and <a href=\"https://github.com/wangLabCSU\" target=\"_blank\" rel=\"noopener\">WanglabCSU</a>, 2024-2026. All rights reserved."
    right: "If Bizard helps your research, please [cite it](https://doi.org/10.1002/imm3.70038). Built with [Quarto](https://quarto.org/)."
    center: |
      <span class="footer-busuanzi">
        Site Views <span id="busuanzi_container_site_pv"><span id="busuanzi_value_site_pv">-</span></span>
        · Visitors <span id="busuanzi_container_site_uv"><span id="busuanzi_value_site_uv">-</span></span>
        · Page Views <span id="busuanzi_container_page_pv"><span id="busuanzi_value_page_pv">-</span></span>
      </span>

  sidebar:
    logo: "images/Bizard_logo.png"
    pinned: true
    align: center
    tools:
      - icon: github
        href: https://github.com/openbiox/Bizard
        text: "Bizard GitHub website"
      - icon: twitter
        href: https://x.com/PengL_Robin
        text: "Peng Luo (Robin)"
      - icon: translate

    style: "docked"
    search: true
    collapse-level: 1
    contents:
      - text: "<i class='fa-solid fa-house'></i> Welcome"
        href: index.qmd
      - text: "<i class='fa-solid fa-signs-post'></i> Tutorial"
        href: Tutorial.qmd
      - text: "<i class='fa-solid fa-panorama'></i> Graph Gallery"
        href: GraphGallery.qmd
      - text: "<i class='fa-solid fa-wand-magic-sparkles'></i> Skills"
        href: Skills.qmd
      - text: "<i class='fa-solid fa-palette'></i> Colors"
        href: Colors.qmd
      - section: "<i class='fa-solid fa-atom'></i> 𝐁𝐀𝐒𝐈𝐂𝐒"
      - section: "<i class='fa-solid fa-chart-simple'></i> Distribution"
        contents:
          - text: "Violin Plot"
            href: Distribution/ViolinPlot.qmd
          - text: "Density Plot"
            href: Distribution/Density.qmd
          - text: "Histogram"
            href: Distribution/Histogram.qmd
          - text: "BreakPlot"
            href: Distribution/BreakPlot.qmd
          - text: "Box Plot"
            href: Distribution/BoxPlot.qmd
          - text: "Ridgeline Plot"
            href: Distribution/Ridgeline.qmd
          - text: "Beeswarm Plot"
            href: Distribution/Beeswarm.qmd
          - text: "RadialColumnChart"
            href: Distribution/RadialColumnChart.qmd
          - text: "Raincloud Plot"
            href: Distribution/RaincloudPlot.qmd
      - section: "<i class='fa-solid fa-diagram-project'></i> Correlation"
        contents:
          - text: "Scatter Plot"
            href: Correlation/Scatter.qmd
          - text: "Heatmap"
            href: Correlation/Heatmap.qmd
          - text: "ComplexHeatmap"
            href: Correlation/ComplexHeatmap.qmd
          - text: "Correlogram"
            href: Correlation/Correlogram.qmd
          - text: "Bubble Plot"
            href: Correlation/Bubble.qmd
          - text: "Connected Scatter"
            href: Correlation/ConnectedScatter.qmd
          - text: "2D Density"
            href: Correlation/Density2D.qmd
          - text: "PCA Plot"
            href: Correlation/PCAplot.qmd
          - text: "UMAP Plot"
            href: Correlation/UMAPplot.qmd
          - text: "Biplot"
            href: Correlation/Biplot.qmd
          - text: "TernaryPlot"
            href: Correlation/TernaryPlot.qmd
          - text: "Bubble Heatmap"
            href: Correlation/BubbleHeatmap.qmd

      - section: "<i class='fa-solid fa-arrow-up-a-z'></i> Ranking"
        contents:
          - text: "Bar Plot"
            href: Ranking/BarPlot.qmd
          - text: "Radar/Spider Chart"
            href: Ranking/Radar.qmd
          - text: "Wordcloud"
            href: Ranking/Wordcloud.qmd
          - text: "Parallel Coordinates Plot"
            href: Ranking/Parallel.qmd
          - text: "Lollipop Plot"
            href: Ranking/Lollipop.qmd
          - text: "Circular Barplot"
            href: Ranking/CircularBarplot.qmd
          - text: "Table"
            href: Ranking/Table.qmd
          - text: "VeenPlot"
            href: Ranking/VennPlot.qmd
          - text: "UpsetPlot"
            href: Ranking/UpsetPlot.qmd
      - section: "<i class='fa-solid fa-chart-pie'></i> Composition"
        contents:
          - text: "Grouped and Stacked Barplot"
            href: Composition/GroupedBarplot.qmd
          - text: "Treemap"
            href: Composition/Treemap.qmd
          - text: "Donut Chart"
            href: Composition/Donut.qmd
          - text: "Pie Chart"
            href: Composition/PieChart.qmd
          - text: "Part Pie Chart"
            href: Composition/PartPieChart.qmd
          - text: "Dendrogram"
            href: Composition/Dendrogram.qmd
          - text: "Circular Packing Chart"
            href: Composition/CircularPacking.qmd
          - text: "Waffle Chart"
            href: Composition/Waffle.qmd
          - text: "Circular Multi-track Annotation Plot"
            href: Composition/CircularAnnotation.qmd
          - text: "Radial Stacked Bar Plot"
            href: Composition/RadialStackedBar.qmd

      - section: "<i class='fa-solid fa-timeline'></i> Evolution"
        contents:
          - text: "Line Chart"
            href: DataOverTime/LineChart.qmd
          - text: "Area Chart"
            href: DataOverTime/AreaChart.qmd
          - text: "Stacked Area Chart"
            href: DataOverTime/StackedArea.qmd
          - text: "Streamgraph"
            href: DataOverTime/Streamgraph.qmd
          - text: "Timeseries"
            href: DataOverTime/Timeseries.qmd
          - text: "Calend Highlight"
            href: DataOverTime/CalendHighlight.qmd
      - section: "<i class='fa-solid fa-chart-diagram'></i> Proportion/Flow"
        contents:
          - text: "Chord Diagram"
            href: Proportion/ChordDiagram.qmd
          - text: "Dice Plot"
            href: Proportion/DicePlot.qmd
          - text: "Network Graph"
            href: Proportion/Network.qmd
          - text: "Sankey Diagram"
            href: Proportion/Sankey.qmd
          - text: "Arc Diagram"
            href: Proportion/ArcDiagram.qmd
          #- text: "Hierarchical Edge Bundling"
          #  href: Proportion/EdgeBundling.qmd
      - section: "<i class='fa-solid fa-seedling'></i> Animation"
        contents:
          - text: "Animation"
            href: Animation/Animation.qmd
          - text: "Interactivity"
            href: Animation/Interactivity.qmd
      - section: "<i class='fa-solid fa-dna'></i> 𝐎𝐌𝐈𝐂𝐒"
        contents:
          - text: "CollinearityPlot"
            href: Omics/CollinearityPlot.qmd
          - text: "GeneStructurePlot"
            href: Omics/GeneStructurePlot.qmd
          - text: "ManhattanPlot"
            href: Omics/ManhattanPlot.qmd
          - text: "MultiVolcanoPlot"
            href: Omics/MultiVolcanoPlot.qmd
          - text: "NetworkPlot"
            href: Omics/NetworkPlot.qmd
          - text: "SankeyBubblePlot"
            href: Omics/SankeyBubblePlot.qmd
          - text: "VolcanoPlot"
            href: Omics/VolcanoPlot.qmd
          - text: "iVolcanoPlot"
            href: Omics/iVolcanoPlot.qmd
          - text: "ChromosomePlot"
            href: Omics/ChromosomePlot.qmd
          - text: "PopulationMapPlot"
            href: Omics/PopulationMapPlot.qmd
          - text: "SyntenyBlocksPlot"
            href: Omics/SyntenyBlocksPlot.qmd
          - text: "KeggPathwayPlot"
            href: Omics/KeggPathwayPlot.qmd
          - text: "MultiSeqsAlignment"
            href: Omics/MultiSeqsAlignment.qmd
          - text: "GWAS Circos Plot"
            href: Omics/GwasSnpPlot.qmd
          - text: "MotifPlot"
            href: Omics/MotifPlot.qmd
          - text: "TextEnrichmentBarPlot"
            href: Omics/TextEnrichmentBarPlot.qmd
          - text: "CellChatCirclePlot"
            href: Omics/CellChatCirclePlot.qmd
          - text: "FC-FC Scatter Plot"
            href: Omics/FcFcPlot.qmd
          - text: "Mutation Landscape Oncoplot"
            href: Omics/MutationOncoplot.qmd
          - text: "Sampling Site Map"
            href: Omics/SamplingMap.qmd

      - section: "<i class='fa-brands fa-python'></i> 𝐏𝐘𝐓𝐇𝐎𝐍"
        contents:
          - text: "Scatter Plot (Python)"
            href: Python/ScatterPlot.qmd
          - text: "Violin Plot (Python)"
            href: Python/ViolinPlot.qmd
          - text: "Heatmap (Python)"
            href: Python/Heatmap.qmd
          - text: "Volcano Plot (Python)"
            href: Python/VolcanoPlot.qmd
          - text: "Bar Plot (Python)"
            href: Python/BarPlot.qmd
          - text: "Box Plot (Python)"
            href: Python/BoxPlot.qmd
          - text: "Histogram & Density (Python)"
            href: Python/HistKdePlot.qmd
          - text: "Line Plot (Python)"
            href: Python/LinePlot.qmd
          - text: "Ridgeline Plot (Python)"
            href: Python/RidgelinePlot.qmd
          - text: "Raincloud Plot (Python)"
            href: Python/RaincloudPlot.qmd
          - text: "Lollipop & Dumbbell (Python)"
            href: Python/LollipopPlot.qmd
          - text: "Joint & Pair Plot (Python)"
            href: Python/JointPairPlot.qmd
          - text: "Pie & Donut (Python)"
            href: Python/PieDonutPlot.qmd
          - text: "Area & Streamgraph (Python)"
            href: Python/AreaPlot.qmd
          - text: "Venn Diagram (Python)"
            href: Python/VennPlot.qmd
          - text: "UpSet Plot (Python)"
            href: Python/UpSetPlot.qmd
          - text: "PCA Plot (Python)"
            href: Python/PcaPlot.qmd
          - text: "Correlogram (Python)"
            href: Python/CorrelogramPlot.qmd
          - text: "Bivariate Density (Python)"
            href: Python/BivariateDensityPlot.qmd
          - text: "Significance Annotation (Python)"
            href: Python/SignificanceAnnotation.qmd
          - text: "MA Plot (Python)"
            href: Python/MAPlot.qmd
          - text: "Manhattan & QQ (Python)"
            href: Python/ManhattanPlot.qmd
          - text: "Survival Curve (Python)"
            href: Python/SurvivalPlot.qmd
          - text: "Forest Plot (Python)"
            href: Python/ForestPlot.qmd
          - text: "ROC & PR (Python)"
            href: Python/RocPrPlot.qmd
          - text: "Confusion Matrix (Python)"
            href: Python/ConfusionMatrixPlot.qmd
          - text: "Enrichment Plot (Python)"
            href: Python/EnrichmentPlot.qmd
          - text: "Complex Heatmap (Python)"
            href: Python/ComplexHeatmap.qmd
          - text: "Circos & Chord (Python)"
            href: Python/CircosPlot.qmd
          - text: "Faceted Plots (Python)"
            href: Python/FacetGridPlot.qmd
          - text: "Multi-Panel Figures (Python)"
            href: Python/MultiPanelPlot.qmd
          - text: "Publication Style & Export (Python)"
            href: Python/PublicationStyle.qmd
          - text: "Sankey Diagram (Python)"
            href: Python/SankeyDiagram.qmd
          - text: "Parallel Categories (Python)"
            href: Python/ParallelCategoriesPlot.qmd
          - text: "Choropleth Map (Python)"
            href: Python/ChoroplethMap.qmd
          - text: "scRNA-seq UMAP (Python)"
            href: Python/ScrnaUmapPlot.qmd
          - text: "scRNA-seq Dot Plot (Python)"
            href: Python/ScrnaDotPlot.qmd
          - text: "scRNA-seq Stacked Violin (Python)"
            href: Python/ScrnaStackedViolin.qmd
          - text: "GSEA Running-Score (Python)"
            href: Python/GseaPlot.qmd
          - text: "Oncoprint (Python)"
            href: Python/OncoprintPlot.qmd

      - section: "<i class='fa-solid fa-flask-vial'></i> 𝐉𝐔𝐋𝐈𝐀"
        contents:
          - text: "Scatter Plot (Julia)"
            href: Julia/ScatterPlot.qmd
          - text: "Violin Plot (Julia)"
            href: Julia/ViolinPlot.qmd
          - text: "Heatmap (Julia)"
            href: Julia/Heatmap.qmd
          - text: "Bar Plot (Julia)"
            href: Julia/BarPlot.qmd
          - text: "Box Plot (Julia)"
            href: Julia/BoxPlot.qmd
          - text: "Histogram & Density (Julia)"
            href: Julia/HistKdePlot.qmd
          - text: "Line Plot (Julia)"
            href: Julia/LinePlot.qmd
          - text: "Raincloud Plot (Julia)"
            href: Julia/RaincloudPlot.qmd
          - text: "Pie & Donut (Julia)"
            href: Julia/PieDonutPlot.qmd
          - text: "Area & Streamgraph (Julia)"
            href: Julia/AreaPlot.qmd
          - text: "Lollipop & Dumbbell (Julia)"
            href: Julia/LollipopPlot.qmd
          - text: "Correlogram (Julia)"
            href: Julia/CorrelogramPlot.qmd
          - text: "Radar Plot (Julia)"
            href: Julia/RadarPlot.qmd
          - text: "Survival Curve (Julia)"
            href: Julia/SurvivalPlot.qmd
          - text: "ROC & PR (Julia)"
            href: Julia/RocPrPlot.qmd
          - text: "Forest Plot (Julia)"
            href: Julia/ForestPlot.qmd
          - text: "Manhattan & QQ (Julia)"
            href: Julia/ManhattanPlot.qmd
          - text: "Faceted Plots (Julia)"
            href: Julia/FacetPlot.qmd
          - text: "Multi-Panel Figures (Julia)"
            href: Julia/GridLayoutPlot.qmd
          - text: "Annotated Heatmap (Julia)"
            href: Julia/AnnotatedHeatmap.qmd

      - section: "<i class='fa-solid fa-virus-covid'></i> 𝐂𝐋𝐈𝐍𝐈𝐂𝐒"
        contents:
          - text: "Nomogram"
            href: Clinics/Nomogram.qmd
          - text: "RegressionTable"
            href: Clinics/RegressionTable.qmd
          - text: "MetaForestPlot"
            href: Clinics/MetaForestPlot.qmd
          - text: "LollipopPlot"
            href: Clinics/LollipopPlot.qmd
          - text: "KaplanMeierPlot"
            href: Clinics/KaplanMeierPlot.qmd
          - text: "MosaicPlot"
            href: Clinics/MosaicPlot.qmd
          - text: "Bar, Beeswarm and Line Combination Plot"
            href: Clinics/CombinationPanel.qmd

      - section: "<i class='fa-solid fa-cloud'></i> 𝐇𝐈𝐏𝐋𝐎𝐓"
      - section: "<i class='fa-solid fa-atom'></i> BASICS"
        contents:
          - text: "Area"
            href: Hiplot/001-area.qmd
          - text: "Barcode Plot"
            href: Hiplot/002-barcode-plot.qmd
          - text: "3D Barplot"
            href: Hiplot/003-barplot-3d.qmd
          - text: "Barplot (errorbar)"
            href: Hiplot/005-barplot-errorbar.qmd
          - text: "Barplot (errorbar2)"
            href: Hiplot/006-barplot-errorbar2.qmd
          - text: "Multiple Barplot&Line"
            href: Hiplot/009-barplot-line-multiple.qmd
          - text: "Beeswarm"
            href: Hiplot/012-beeswarm.qmd
          - text: "Bumpchart"
            href: Hiplot/017-bumpchart.qmd
          - text: "Chi-square-fisher Test"
            href: Hiplot/019-chi-square-fisher.qmd
          - text: "Circle Packing"
            href: Hiplot/021-circle-packing.qmd
          - text: "Circular Barplot"
            href: Hiplot/023-circular-barplot.qmd
          - text: "Circular Pie Chart"
            href: Hiplot/024-circular-pie-chart.qmd
          - text: "Connected Scatterplot"
            href: Hiplot/026-connected-scatterplot.qmd
          - text: "Contour (Matrix)"
            href: Hiplot/027-contour-matrix.qmd
          - text: "Contour (XY)"
            href: Hiplot/028-contour-xy.qmd
          - text: "Simplified Correlation Heatmap"
            href: Hiplot/029-cor-heatmap-simple.qmd
          - text: "Custom Heatmap"
            href: Hiplot/034-custom-heat-map.qmd
          - text: "Custom Icon Scatter"
            href: Hiplot/035-custom-icon-scatter.qmd
          - text: "D3 Wordcloud"
            href: Hiplot/036-d3-wordcloud.qmd
          - text: "Mirror Density & Histogram"
            href: Hiplot/038-density-hist-mirror.qmd
          - text: "Density-Histogram"
            href: Hiplot/039-density-histogram.qmd
          - text: "Density"
            href: Hiplot/040-density.qmd
          - text: "Deviation Plot"
            href: Hiplot/041-deviation-plot.qmd
          - text: "Diverging Scale"
            href: Hiplot/043-diverging-scale.qmd
          - text: "Donut"
            href: Hiplot/045-donut.qmd
          - text: "Dual Y Axis Chart"
            href: Hiplot/047-dual-y-axis.qmd
          - text: "Dumbbell Chart"
            href: Hiplot/048-dumbbell.qmd
          - text: "Easy SOM"
            href: Hiplot/050-easy-som.qmd
          - text: "Eulerr Plot"
            href: Hiplot/051-eulerr.qmd
          - text: "Extended Scatter"
            href: Hiplot/052-extended-scatter.qmd
          - text: "Fan Plot"
            href: Hiplot/054-fan.qmd
          - text: "Flower plot"
            href: Hiplot/056-flowerplot.qmd
          - text: "Barstats"
            href: Hiplot/063-ggbarstats.qmd
          - text: "Betweenstats"
            href: Hiplot/064-ggbetweenstats.qmd
          - text: "Directed Acyclic Graphs"
            href: Hiplot/065-ggdag.qmd
          - text: "Dist Plot"
            href: Hiplot/066-ggdist.qmd
          - text: "Histostats"
            href: Hiplot/067-gghistostats.qmd
          - text: "GGPIE"
            href: Hiplot/068-ggpie.qmd
          - text: "Piestats Group"
            href: Hiplot/069-ggpiestats-group.qmd
          - text: "Piestats"
            href: Hiplot/071-ggpiestats.qmd
          - text: "GGPubr Boxplot"
            href: Hiplot/072-ggpubr-boxplot.qmd
          - text: "Scatterstats"
            href: Hiplot/073-ggscatterstats.qmd
          - text: "Complex-Violin"
            href: Hiplot/075-ggwithinstats.qmd
          - text: "ggwordcloud"
            href: Hiplot/076-ggwordcloud.qmd
          - text: "Group Rank Dotplot"
            href: Hiplot/080-grdotplot.qmd
          - text: "Group Bubble"
            href: Hiplot/081-group-bubble.qmd
          - text: "Group-comparison Heatmap"
            href: Hiplot/082-group-comparison.qmd
          - text: "Group Dumbbell"
            href: Hiplot/083-group-dumbbell.qmd
          - text: "Group Line"
            href: Hiplot/084-group-line.qmd
          - text: "Half Violin"
            href: Hiplot/085-half-violin.qmd
          - text: "Interval Area Chart"
            href: Hiplot/089-interval-area-chart.qmd
          - text: "Interval Bar Chart"
            href: Hiplot/090-interval-bar-chart.qmd
          - text: "Likert Plot"
            href: Hiplot/091-likert.qmd
          - text: "Line (Color Dot)"
            href: Hiplot/092-line-color-dot.qmd
          - text: "Line (errorbar)"
            href: Hiplot/093-line-errorbar.qmd
          - text: "Line"
            href: Hiplot/095-line.qmd
          - text: "Moon charts"
            href: Hiplot/122-moon-charts.qmd
          - text: "Multiple Histograms"
            href: Hiplot/125-multiple-histograms.qmd
          - text: "Network (igraph)"
            href: Hiplot/127-network-igraph.qmd
          - text: "Neural Network"
            href: Hiplot/129-neural-network.qmd
          - text: "Parallel Coordinate"
            href: Hiplot/132-parallel-coordinate.qmd
          - text: "Pareto Chart"
            href: Hiplot/133-pareto-chart.qmd
          - text: "Parliament"
            href: Hiplot/134-parliament.qmd
          - text: "Perspective"
            href: Hiplot/137-perspective.qmd
          - text: "PCAtools"
            href: Hiplot/138-pie-3d.qmd
          - text: "Pie Group"
            href: Hiplot/139-pie-group.qmd
          - text: "Pie Matrix"
            href: Hiplot/140-pie-matrix.qmd
          - text: "Pie"
            href: Hiplot/141-pie.qmd
          - text: "Point (SD)"
            href: Hiplot/142-point-sd.qmd
          - text: "Pyramid Chart"
            href: Hiplot/144-pyramid-chart.qmd
          - text: "Pyramid Chart 2"
            href: Hiplot/145-pyramid-chart2.qmd
          - text: "Pyramid Stack"
            href: Hiplot/146-pyramid-stack.qmd
          - text: "Pyramid Stack2"
            href: Hiplot/147-pyramid-stack2.qmd
          - text: "R Script Flow"
            href: Hiplot/149-r-code-flow.qmd
          - text: "Radar"
            href: Hiplot/150-radar.qmd
          - text: "Ribbon"
            href: Hiplot/153-ribbon.qmd
          - text: "Ridge"
            href: Hiplot/154-ridge.qmd
          - text: "Sankey"
            href: Hiplot/158-sankey.qmd
          - text: "3D-Scatter"
            href: Hiplot/159-scatter-3d.qmd
          - text: "Gradient Scatter"
            href: Hiplot/160-scatter-gradient.qmd
          - text: "Scatter"
            href: Hiplot/161-scatter.qmd
          - text: "Scatter2"
            href: Hiplot/162-scatter2.qmd
          - text: "Scatterpie"
            href: Hiplot/163-scatterpie.qmd
          - text: "Simple Funnel Diagram"
            href: Hiplot/164-simple-funnel-diagram.qmd
          - text: "Slopegraph"
            href: Hiplot/165-slopegraph.qmd
          - text: "Percentsge Stacked Bar Chart"
            href: Hiplot/167-stacked-percentage-bar-chart.qmd
          - text: "Streamgraph"
            href: Hiplot/168-streamgraph.qmd
          - text: "Treemap"
            href: Hiplot/173-treemap.qmd
          - text: "Tricolor Histogram"
            href: Hiplot/174-tricolor-histogram.qmd
          - text: "Upset Plot"
            href: Hiplot/177-upset-plot.qmd
          - text: "Venn"
            href: Hiplot/178-venn.qmd
          - text: "Venn2"
            href: Hiplot/179-venn2.qmd
          - text: "Violin Group"
            href: Hiplot/180-violin-group.qmd
          - text: "Violin"
            href: Hiplot/181-violin.qmd
          - text: "Visdat"
            href: Hiplot/182-visdat.qmd
          - text: "Waffle Plot"
            href: Hiplot/184-waffle.qmd
          - text: "Waterfalls Plot2"
            href: Hiplot/185-waterfalls-plot.qmd
          - text: "Waterfalls"
            href: Hiplot/186-waterfalls.qmd
          - text: "PCA"
            href: Hiplot/187-pca.qmd
      - section: "<i class='fa-solid fa-dna'></i> OMICS"
        contents:
          - text: "Barplot Color Group"
            href: Hiplot/004-barplot-color-group.qmd
          - text: "Barplot Gradient"
            href: Hiplot/008-barplot-gradient.qmd
          - text: "Corrplot Big Data"
            href: Hiplot/013-big-corrplot.qmd
          - text: "Bubble"
            href: Hiplot/016-bubble.qmd
          - text: "Chord Plot"
            href: Hiplot/020-chord.qmd
          - text: "Correlation Heatmap"
            href: Hiplot/030-cor-heatmap.qmd
          - text: "Corrplot"
            href: Hiplot/033-corrplot.qmd
          - text: "Dendrogram"
            href: Hiplot/037-dendrogram.qmd
          - text: "Diffusion Map"
            href: Hiplot/042-diffusion-map.qmd
          - text: "DIY GSEA"
            href: Hiplot/044-diy-gsea.qmd
          - text: "Dotchart"
            href: Hiplot/046-dotchart.qmd
          - text: "Fishplot"
            href: Hiplot/055-fishplot.qmd
          - text: "Funnel Plot (metafor)"
            href: Hiplot/057-funnel-plot-metafor.qmd
          - text: "Funnel Plot"
            href: Hiplot/058-funnel-plot.qmd
          - text: "Gene Density"
            href: Hiplot/060-gene-density.qmd
          - text: "Gene Ranking Dotplot"
            href: Hiplot/061-gene-rank.qmd
          - text: "Gene Cluster Trend"
            href: Hiplot/062-gene-trend.qmd
          - text: "Seqlogo"
            href: Hiplot/074-ggseqlogo.qmd
          - text: "GOBar Plot"
            href: Hiplot/077-gobar.qmd
          - text: "GOBubble Plot"
            href: Hiplot/078-gobubble.qmd
          - text: "GOCircle Plot"
            href: Hiplot/079-gocircle.qmd
          - text: "Heatmap"
            href: Hiplot/086-heatmap.qmd
          - text: "Hi-C Heatmap"
            href: Hiplot/087-hic-heatmap.qmd
          - text: "Matrix Bubble"
            href: Hiplot/118-matrix-bubble.qmd
          - text: "PCA2"
            href: Hiplot/135-pca2.qmd
          - text: "PCAtools"
            href: Hiplot/136-pcatools.qmd
          - text: "EnhancedMA"
            href: Hiplot/143-pseudo-enhanced-ma.qmd
          - text: "QQ Plot"
            href: Hiplot/148-qqplot.qmd
          - text: "Rose Chart"
            href: Hiplot/157-rose-chart.qmd
          - text: "Simple Funnel Diagram"
            href: Hiplot/166-stack-violin.qmd
          - text: "Treeheatr"
            href: Hiplot/172-treeheatr.qmd
          - text: "tSNE"
            href: Hiplot/175-tsne.qmd
          - text: "UMAP"
            href: Hiplot/176-umap.qmd
          - text: "Volcano"
            href: Hiplot/183-volcano.qmd
      - section: "<i class='fa-solid fa-stethoscope'></i> CLINICS"
        contents:
          - text: "Barplot"
            href: Hiplot/010-barplot.qmd
          - text: "Beanplot"
            href: Hiplot/011-beanplot.qmd
          - text: "Bivariate Chart"
            href: Hiplot/014-bivariate.qmd
          - text: "Boxplot"
            href: Hiplot/015-boxplot.qmd
          - text: "Calibration Curve"
            href: Hiplot/018-calibration-curve.qmd
          - text: "Complex Heatmap"
            href: Hiplot/025-complex-heatmap.qmd
          - text: "Easy Pairs"
            href: Hiplot/049-easy-pairs.qmd
          - text: "Cox Models Forest"
            href: Hiplot/053-ezcox.qmd
          - text: "Gantt"
            href: Hiplot/059-gantt.qmd
          - text: "Histogram"
            href: Hiplot/088-histogram.qmd
          - text: "Line Regression"
            href: Hiplot/094-line-regression.qmd
          - text: "Meta-analysis of Binary Data"
            href: Hiplot/119-meta-bin.qmd
          - text: "Meta-analysis of Continuous Data"
            href: Hiplot/120-meta-cont.qmd
          - text: "Meta-Subgroup Analysis"
            href: Hiplot/121-metawho.qmd
          - text: "Mosaic Ratio Plot"
            href: Hiplot/123-mosaic.qmd
          - text: "Nomogram (Logistic)"
            href: Hiplot/130-nomogram-logistic.qmd
          - text: "Nomogram"
            href: Hiplot/131-nomogram.qmd
          - text: "RCS-COX"
            href: Hiplot/151-rcs-cox.qmd
          - text: "RCS-LRM"
            href: Hiplot/152-rcs-lrm.qmd
          - text: "Risk Factor Analysis"
            href: Hiplot/155-risk-plot.qmd
          - text: "ROC"
            href: Hiplot/156-roc.qmd
          - text: "Survival Analysis"
            href: Hiplot/169-survival.qmd
          - text: "Taylor Diagram"
            href: Hiplot/170-taylor-diagram.qmd
          - text: "Time ROC"
            href: Hiplot/171-time-roc.qmd
      - section: "<i class='fa-solid fa-earth-oceania'></i> MAP"
        contents:
          - text: "Africa Map"
            href: Hiplot/096-map-africa.qmd
          - text: "Americas Map"
            href: Hiplot/097-map-americas.qmd
          - text: "China Map (City)"
            href: Hiplot/098-map-china-city.qmd
          - text: "China Map (County)"
            href: Hiplot/099-map-china-county.qmd
          - text: "China Map"
            href: Hiplot/100-map-china.qmd
          - text: "China Map 2"
            href: Hiplot/101-map-china2.qmd
          - text: "Europe Map"
            href: Hiplot/102-map-europe.qmd
          - text: "France Map (Town)"
            href: Hiplot/103-map-france-town.qmd
          - text: "France Map"
            href: Hiplot/104-map-france.qmd
          - text: "Germany Map (Town)"
            href: Hiplot/106-map-germany-town.qmd
          - text: "Germany Map"
            href: Hiplot/107-map-germany.qmd
          - text: "North America Map"
            href: Hiplot/108-map-north-america.qmd
          - text: "Oceania/Antarc Map"
            href: Hiplot/109-map-oceania-antarc.qmd
          - text: "South America Map"
            href: Hiplot/111-map-south-america.qmd
          - text: "Oceania/Antarc Map"
            href: Hiplot/112-map-uk-city.qmd
          - text: "South America Map"
            href: Hiplot/113-map-uk.qmd
          - text: "Oceania/Antarc Map"
            href: Hiplot/114-map-usa-county.qmd
          - text: "USA Map (States)"
            href: Hiplot/115-map-usa.qmd
          - text: "World Map"
            href: Hiplot/116-map-world.qmd
          - text: "World Map 2"
            href: Hiplot/117-map-world2.qmd

      - text: "<i class='fa-solid fa-laptop-code'></i> Tool Links"
        href: ToolLinks.qmd
      - text: "<i class='fa-solid fa-people-group'></i> About Us"
        href: About.qmd


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