diff --git a/src/API/src/schema.gql b/src/API/src/schema.gql index 527ccee42..4e6648567 100644 --- a/src/API/src/schema.gql +++ b/src/API/src/schema.gql @@ -63,6 +63,17 @@ input Coord { long: Float } +type Country { + alternative_names: [String!]! + creation: DateTime! + id: String! + modified: DateTime! + name: String! + owner: String + sites: [Site!] + updater: String +} + input CreateNewsInput { article: String! id: String @@ -88,8 +99,9 @@ input CreateSpeciesInformationInput { id: String link: String! name: String! + previewImage: String shortDescription: String! - speciesImage: String! + speciesImage: String } """doi""" @@ -198,6 +210,9 @@ type Mutation { deleteSpeciesInformation(id: String!): Boolean! disableNotifications(disable: Boolean!, userId: String!): Boolean! requestRoles(email: String!, requestReason: String!, rolesRequested: [String!]!): Boolean! + updateCountry(input: UpdateCountryInput!): Country! + updateRecordedSpecies(input: UpdateRecordedSpeciesInput!): RecordedSpecies! + updateReference(input: UpdateReferenceInput!, num_id: Int!): Reference! updateUserRoles(input: UserRoleInput!): UserRole! upsertNewsTranslation(input: UpsertNewsTranslationInput!): NewsTranslation! } @@ -323,16 +338,19 @@ type Query { OccurrenceData(bounds: BoundsFilter, filters: OccurrenceFilter, skip: Float = 0, take: Float = 1): PaginatedOccurrenceReturnData! allCommunicationLogs: [CommunicationLog!]! allCommunicationLogsBySentStatus(status: String!): [CommunicationLog!]! + allCountries: [Country!]! allDois: [DOI!]! allDoisByStatus(status: String!): [DOI!]! allGeoData: Bionomics! allNews: [News!]! - allReferenceData(endId: Float = null, order: String = "asc", orderBy: String = "num_id", skip: Float = 0, startId: Float = 1, take: Float = 1, textFilter: String = ""): PaginatedReferenceData! + allRecordedSpecies: [RecordedSpecies!]! + allReferenceData(endId: Float = null, filterField: String = "article_title", order: String = "asc", orderBy: String = "num_id", skip: Float = 0, startId: Float = 1, take: Float = 1, textFilter: String = ""): PaginatedReferenceData! allSpeciesInformation: [SpeciesInformation!]! allUploadedDatasets: [UploadedDataset!] allUploadedModels: [UploadedModel!] allUserRoles: [UserWithRoles!]! communicationLogById(id: String!): CommunicationLog + country(id: String!): Country datasetById(id: String!): Dataset datasets: [Dataset!]! doiById(id: String!): DOI @@ -340,6 +358,7 @@ type Query { getHomepageAnalytics(endAt: Float!, startAt: Float!, timezone: String!, unit: String!): HomepageStats! newsById(id: String!): News! postProcessModel(blobLocation: String!, displayName: String!, maxValue: Float!, modelName: String!, uploadedModelId: String!): ModelProcessingStatus! + recordedSpeciesById(id: String!): RecordedSpecies referenceData(id: String!): Reference! speciesInformationById(id: String!): SpeciesInformation! uploadedDatasetById(id: String!): UploadedDataset @@ -352,6 +371,7 @@ type Query { """recorded species data""" type RecordedSpecies { category: String + color: String display_name: String id: String! species: String! @@ -430,8 +450,33 @@ type SpeciesInformation { id: String! link: String name: String! + previewImage: String shortDescription: String! - speciesImage: String! + speciesImage: String +} + +input UpdateCountryInput { + alternative_names: [String!] + id: String! + name: String +} + +input UpdateRecordedSpeciesInput { + category: String + color: String + displayName: String + id: String! +} + +input UpdateReferenceInput { + article_title: String! + author: String! + citation: String! + journal_title: String! + published: Boolean! + report_type: String! + v_data: Boolean! + year: Float! } """uploaded dataset""" diff --git a/src/Help/docusaurus.config.js b/src/Help/docusaurus.config.js index 896337a01..d00f25528 100644 --- a/src/Help/docusaurus.config.js +++ b/src/Help/docusaurus.config.js @@ -20,7 +20,7 @@ baseUrl: process.env.HELP_BASE_URL ?? '/en/latest/', onBrokenLinks: 'throw', // to replace "en" with "zh-Hans". i18n: { defaultLocale: 'en', - locales: ['en'], + locales: ['en', 'fr', 'pt'], }, presets: [ @@ -49,10 +49,10 @@ baseUrl: process.env.HELP_BASE_URL ?? '/en/latest/', onBrokenLinks: 'throw', alt: 'Vector Atlas Logo', src: 'img/vector-atlas-logo.svg', height: '100px', - href: process.env.HELP_NAVBAR_HREF ?? 'https://vectoratlas.icipe.org/' + href: 'https://vectoratlas.icipe.org/', }, }, - }) + }), }; -module.exports = config; +module.exports = config; \ No newline at end of file diff --git a/src/Help/i18n/fr/code.json b/src/Help/i18n/fr/code.json new file mode 100644 index 000000000..5d98add38 --- /dev/null +++ b/src/Help/i18n/fr/code.json @@ -0,0 +1,253 @@ +{ + "theme.ErrorPageContent.title": { + "message": "Cette page a planté.", + "description": "The title of the fallback page when the page crashed" + }, + "theme.ErrorPageContent.tryAgain": { + "message": "Réessayer", + "description": "The label of the button to try again when the page crashed" + }, + "theme.NotFound.title": { + "message": "Page introuvable", + "description": "The title of the 404 page" + }, + "theme.NotFound.p1": { + "message": "Nous n'avons pas trouvé ce que vous recherchez.", + "description": "The first paragraph of the 404 page" + }, + "theme.NotFound.p2": { + "message": "Veuillez contacter le propriétaire du site qui vous a lié à l'URL d'origine et leur faire savoir que leur lien est cassé.", + "description": "The 2nd paragraph of the 404 page" + }, + "theme.admonition.note": { + "message": "remarque", + "description": "The default label used for the Note admonition (:::note)" + }, + "theme.admonition.tip": { + "message": "astuce", + "description": "The default label used for the Tip admonition (:::tip)" + }, + "theme.admonition.danger": { + "message": "danger", + "description": "The default label used for the Danger admonition (:::danger)" + }, + "theme.admonition.info": { + "message": "info", + "description": "The default label used for the Info admonition (:::info)" + }, + "theme.admonition.caution": { + "message": "attention", + "description": "The default label used for the Caution admonition (:::caution)" + }, + "theme.blog.archive.title": { + "message": "Archive", + "description": "The page & hero title of the blog archive page" + }, + "theme.blog.archive.description": { + "message": "Archive", + "description": "The page & hero description of the blog archive page" + }, + "theme.AnnouncementBar.closeButtonAriaLabel": { + "message": "Fermer", + "description": "The ARIA label for close button of announcement bar" + }, + "theme.BackToTopButton.buttonAriaLabel": { + "message": "Retour au début de la page", + "description": "The ARIA label for the back to top button" + }, + "theme.blog.paginator.navAriaLabel": { + "message": "Pagination de la liste des articles du blog", + "description": "The ARIA label for the blog pagination" + }, + "theme.blog.paginator.newerEntries": { + "message": "Nouvelles entrées", + "description": "The label used to navigate to the newer blog posts page (previous page)" + }, + "theme.blog.paginator.olderEntries": { + "message": "Anciennes entrées", + "description": "The label used to navigate to the older blog posts page (next page)" + }, + "theme.blog.post.paginator.navAriaLabel": { + "message": "Pagination des articles du blog", + "description": "The ARIA label for the blog posts pagination" + }, + "theme.blog.post.paginator.newerPost": { + "message": "Article plus récent", + "description": "The blog post button label to navigate to the newer/previous post" + }, + "theme.blog.post.paginator.olderPost": { + "message": "Article plus ancien", + "description": "The blog post button label to navigate to the older/next post" + }, + "theme.blog.post.plurals": { + "message": "Un article|{count} articles", + "description": "Pluralized label for \"{count} posts\". Use as much plural forms (separated by \"|\") as your language support (see https://www.unicode.org/cldr/cldr-aux/charts/34/supplemental/language_plural_rules.html)" + }, + "theme.blog.tagTitle": { + "message": "{nPosts} tagués avec « {tagName} »", + "description": "The title of the page for a blog tag" + }, + "theme.tags.tagsPageLink": { + "message": "Voir tous les tags", + "description": "The label of the link targeting the tag list page" + }, + "theme.docs.breadcrumbs.home": { + "message": "Page d'accueil", + "description": "The ARIA label for the home page in the breadcrumbs" + }, + "theme.docs.breadcrumbs.navAriaLabel": { + "message": "Fil d'Ariane", + "description": "The ARIA label for the breadcrumbs" + }, + "theme.docs.DocCard.categoryDescription": { + "message": "{count} éléments", + "description": "The default description for a category card in the generated index about how many items this category includes" + }, + "theme.colorToggle.ariaLabel": { + "message": "Basculer entre le mode sombre et clair (actuellement {mode})", + "description": "The ARIA label for the navbar color mode toggle" + }, + "theme.colorToggle.ariaLabel.mode.dark": { + "message": "mode sombre", + "description": "The name for the dark color mode" + }, + "theme.colorToggle.ariaLabel.mode.light": { + "message": "mode clair", + "description": "The name for the light color mode" + }, + "theme.docs.paginator.navAriaLabel": { + "message": "Pagination des documents", + "description": "The ARIA label for the docs pagination" + }, + "theme.docs.paginator.previous": { + "message": "Précédent", + "description": "The label used to navigate to the previous doc" + }, + "theme.docs.paginator.next": { + "message": "Suivant", + "description": "The label used to navigate to the next doc" + }, + "theme.docs.tagDocListPageTitle.nDocsTagged": { + "message": "Un document tagué|{count} documents tagués", + "description": "Pluralized label for \"{count} docs tagged\". Use as much plural forms (separated by \"|\") as your language support (see https://www.unicode.org/cldr/cldr-aux/charts/34/supplemental/language_plural_rules.html)" + }, + "theme.docs.tagDocListPageTitle": { + "message": "{nDocsTagged} avec \"{tagName}\"", + "description": "The title of the page for a docs tag" + }, + "theme.docs.versionBadge.label": { + "message": "Version: {versionLabel}" + }, + "theme.docs.versions.unreleasedVersionLabel": { + "message": "Ceci est la documentation de la prochaine version {versionLabel} de {siteTitle}.", + "description": "The label used to tell the user that he's browsing an unreleased doc version" + }, + "theme.docs.versions.unmaintainedVersionLabel": { + "message": "Ceci est la documentation de {siteTitle} {versionLabel}, qui n'est plus activement maintenue.", + "description": "The label used to tell the user that he's browsing an unmaintained doc version" + }, + "theme.docs.versions.latestVersionSuggestionLabel": { + "message": "Pour une documentation à jour, consultez la {latestVersionLink} ({versionLabel}).", + "description": "The label used to tell the user to check the latest version" + }, + "theme.docs.versions.latestVersionLinkLabel": { + "message": "dernière version", + "description": "The label used for the latest version suggestion link label" + }, + "theme.common.headingLinkTitle": { + "message": "Lien direct vers le titre", + "description": "Title for link to heading" + }, + "theme.lastUpdated.atDate": { + "message": " le {date}", + "description": "The words used to describe on which date a page has been last updated" + }, + "theme.lastUpdated.byUser": { + "message": " par {user}", + "description": "The words used to describe by who the page has been last updated" + }, + "theme.lastUpdated.lastUpdatedAtBy": { + "message": "Dernière mise à jour{atDate}{byUser}", + "description": "The sentence used to display when a page has been last updated, and by who" + }, + "theme.common.editThisPage": { + "message": "Éditer cette page", + "description": "The link label to edit the current page" + }, + "theme.navbar.mobileVersionsDropdown.label": { + "message": "Versions", + "description": "The label for the navbar versions dropdown on mobile view" + }, + "theme.common.skipToMainContent": { + "message": "Aller au contenu principal", + "description": "The skip to content label used for accessibility, allowing to rapidly navigate to main content with keyboard tab/enter navigation" + }, + "theme.tags.tagsListLabel": { + "message": "Tags :", + "description": "The label alongside a tag list" + }, + "theme.blog.sidebar.navAriaLabel": { + "message": "Navigation article de blog récent", + "description": "The ARIA label for recent posts in the blog sidebar" + }, + "theme.CodeBlock.wordWrapToggle": { + "message": "Activer/désactiver le retour à la ligne", + "description": "The title attribute for toggle word wrapping button of code block lines" + }, + "theme.CodeBlock.copied": { + "message": "Copié", + "description": "The copied button label on code blocks" + }, + "theme.CodeBlock.copyButtonAriaLabel": { + "message": "Copier le code", + "description": "The ARIA label for copy code blocks button" + }, + "theme.CodeBlock.copy": { + "message": "Copier", + "description": "The copy button label on code blocks" + }, + "theme.DocSidebarItem.toggleCollapsedCategoryAriaLabel": { + "message": "Plier/Déplier la catégorie '{label}' de la barre latérale", + "description": "The ARIA label to toggle the collapsible sidebar category" + }, + "theme.TOCCollapsible.toggleButtonLabel": { + "message": "Sur cette page", + "description": "The label used by the button on the collapsible TOC component" + }, + "theme.navbar.mobileLanguageDropdown.label": { + "message": "Langues", + "description": "The label for the mobile language switcher dropdown" + }, + "theme.blog.post.readMore": { + "message": "Lire plus", + "description": "The label used in blog post item excerpts to link to full blog posts" + }, + "theme.blog.post.readMoreLabel": { + "message": "En savoir plus sur {title}", + "description": "The ARIA label for the link to full blog posts from excerpts" + }, + "theme.blog.post.readingTime.plurals": { + "message": "Une minute de lecture|{readingTime} minutes de lecture", + "description": "Pluralized label for \"{readingTime} min read\". Use as much plural forms (separated by \"|\") as your language support (see https://www.unicode.org/cldr/cldr-aux/charts/34/supplemental/language_plural_rules.html)" + }, + "theme.docs.sidebar.collapseButtonTitle": { + "message": "Réduire le menu latéral", + "description": "The title attribute for collapse button of doc sidebar" + }, + "theme.docs.sidebar.collapseButtonAriaLabel": { + "message": "Réduire le menu latéral", + "description": "The title attribute for collapse button of doc sidebar" + }, + "theme.navbar.mobileSidebarSecondaryMenu.backButtonLabel": { + "message": "← Retour au menu principal", + "description": "The label of the back button to return to main menu, inside the mobile navbar sidebar secondary menu (notably used to display the docs sidebar)" + }, + "theme.docs.sidebar.expandButtonTitle": { + "message": "Déplier le menu latéral", + "description": "The ARIA label and title attribute for expand button of doc sidebar" + }, + "theme.docs.sidebar.expandButtonAriaLabel": { + "message": "Déplier le menu latéral", + "description": "The ARIA label and title attribute for expand button of doc sidebar" + } +} diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current.json b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current.json new file mode 100644 index 000000000..44acf634e --- /dev/null +++ b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current.json @@ -0,0 +1,18 @@ +{ + "version.label": { + "message": "Suivant", + "description": "The label for version current" + }, + "sidebar.tutorialSidebar.category.Exploring-the-data": { + "message": "Explorer les données", + "description": "The label for category Exploring-the-data in sidebar tutorialSidebar" + }, + "sidebar.tutorialSidebar.category.Finding-out-about-the-project": { + "message": "En savoir plus sur le projet", + "description": "The label for category Finding-out-about-the-project in sidebar tutorialSidebar" + }, + "sidebar.tutorialSidebar.category.Contributing-data-to-the-atlas": { + "message": "Contribuer des données à l'atlas", + "description": "The label for category Contributing-data-to-the-atlas in sidebar tutorialSidebar" + } +} \ No newline at end of file diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/01-intro.md b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/01-intro.md new file mode 100644 index 000000000..dba67c009 --- /dev/null +++ b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/01-intro.md @@ -0,0 +1,10 @@ +--- +slug: / +--- + +# Aide Vector Atlas + +Les cartes sont un outil puissant. Elles peuvent illustrer la distribution des espèces de vecteurs de moustiques connues pour transmettre certaines des maladies les plus débilitantes du monde et mettre en évidence les zones où ces espèces ne sont plus sensibles aux insecticides utilisés comme méthode principale de contrôle. Toutes les cartes basées sur des preuves s'appuient sur des données de terrain collectées de nombreuses façons différentes par de multiples collecteurs de données à des fins très variées. Isolément, ces données permettent de répondre aux questions pour lesquelles elles ont été collectées, mais combinées, leur valeur se multiplie. Le Vector Atlas construit un centre de données qui relie les données africaines de base sur l'occurrence des vecteurs, la bionomique et la résistance aux insecticides pour fournir un accès unique à des données fiables et référencées. + +## Comment utiliser ce guide +Les liens à gauche fournissent un guide à travers les différents flux de travail utilisateur du système. Si vous cherchez un guide pour commencer à utiliser le système, commencez par le [Guide de démarrage rapide](/Quick-start). diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/02-Quick-start.md b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/02-Quick-start.md new file mode 100644 index 000000000..e821a7a0c --- /dev/null +++ b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/02-Quick-start.md @@ -0,0 +1,29 @@ +# Guide de démarrage rapide + +Les sections à gauche fournissent une description plus détaillée des différents parcours dans le système, mais ce guide fournit un aperçu rapide de ce que Vector Atlas peut faire et comment vous pouvez explorer les données. + +La page [Accueil](pathname:///) est le point d'entrée initial pour les utilisateurs. Vous pouvez accéder à la carte avec le bouton `Explorer les données`, lire les dernières nouvelles de l'équipe et en savoir plus sur le projet avec le bouton `En savoir plus`. + +![page d'accueil](homepage.png) + +Cliquez sur `Explorer les données` pour accéder à la page de la carte. Cela affiche toutes les données publiées dans le système. + +Cliquez sur l'icône de filtre dans le menu des outils de la carte à gauche. + +![outils de la carte](map-tools.png) + +Cela ouvre les filtres où vous pouvez choisir des pays et/ou des espèces. Filtrez par `Uganda` et l'espèce `An. funestus` pour voir comment les données sont réduites sur la carte. + +![données filtrées](filtered-data.png) + +Vous pouvez ensuite affiner davantage avec l'outil de sélection de zone. Activez le mode en cliquant sur le bouton sous le filtre "Sélectionner par zone". + +![sélection de zone](area-select.png) + +Développez la section des superpositions et cochez la case d'une superposition pour l'activer. + +![superpositions](overlays.png) + +Faites défiler vers le bas jusqu'à la dernière section des outils de carte et développez la section `Télécharger`. Cliquez sur `Télécharger l'image de la carte` pour obtenir une copie de votre carte. + +![carte téléchargée](downloaded-map.png) diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/01-Using the map.md b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/01-Using the map.md new file mode 100644 index 000000000..431aea95f --- /dev/null +++ b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/01-Using the map.md @@ -0,0 +1,63 @@ + Using the map + +The main feature of the Vector Atlas is the map view that can be used to explore the data that the Atlas holds; this data can be filtered, examined and downloaded. + +## Getting to the map +To get to the map click on the map on the homepage, or use the map link in the top navigation bar - both will redirect to the [/map](pathname:///map) route. + +![getting-to-the-data](getting-to-the-map.png "Getting to the data") + +The map tools are in the menu on the left and include tools for filtering, displaying overlays, altering the display of base layers and downloading data. + + +## Filtering data + +Multiple data filters can be applied using the filters available in the first section of the tools on the left. Data can be filtered by: +- country, +- species, +- season, +- control, +- whether adult data is present, +- whether larval data is present, +- the time range of the data (down to month and year) +- selected area (more details below) + +The different filters act as an AND condition, e.g. selecting Uganda and An. arabiensis gets only the data in Uganda with An. arabiensis species. However, within an individual filter it acts as an OR condition, e.g. selecting Uganda and Sudan in the countries filter will get all data for both countries. + +![filters](filters.png) + +### Area select mode + +Data can also be filtered by area; to activate the area select mode, click on the mode button below the "Select by area" filter. + +![area mode](area-select-mode.png) + +This changes the mode on the map so each click is a point on the boundary of the selection polygon, clicking on the original point again will complete the polygon. Once a polygon is completed then the data will be filtered to that area. A new polygon can be created after the first is completed, the first polygon is removed once the second is completed - i.e there is only ever one polygon at once. + +![area filter](area-filter.png) + +Clicking the area mode button again turns the mode off but doesn't remove the selected polygon. This means you can click on points inside the polygon to get more information. Clicking on the `Remove selection` button will clear the polygon and remove any area filter on the data. + +## Getting more information about points + +Clicking on points on the map opens the information panel on the right showing extra details about each of the points under the click (which could be many points close together). + +![point details](point-details.png) + +The details panel can be closed with the close button in the top left of the panel. + +## Overlaying surfaces + +Overlays provide various modelling outputs that can be visualised together and combined with the data to find new insights. Each overlay can be turned on and off independently. + +![overlays](overlays.png) + +Currently the order of the overlays can't be changed but this is a planned feature for the future. + + + +## Altering the base map + +The base map can be altered by turning features and layers on or off. This provides the capability to customise the visualisation that can then be downloaded for reports and publications. + +![changing the base map](changing-base-map.png) diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/02-Learning about species.md b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/02-Learning about species.md new file mode 100644 index 000000000..b626a8617 --- /dev/null +++ b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/02-Learning about species.md @@ -0,0 +1,9 @@ +# Learning about different species + +The Vector Atlas includes a lot of information about the different species of mosquitos on the [Species list](pathname:///species) page, this can be found from the top navigation menu under `More > Species List`. This includes information about the species, its history and distribution. + +![species list](species-list.png) + +Clicking on one of the items in the list will take you to a page with more details about that given species. + +![species details](species-details.png) diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/03-Listing the sources.md b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/03-Listing the sources.md new file mode 100644 index 000000000..f5a1ad6ea --- /dev/null +++ b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/03-Listing the sources.md @@ -0,0 +1,5 @@ +# Listing the sources + +The Vector Atlas tracks the sources used in the data within the system and lists them on the [Sources](pathname:///sources) page, this can be navigated to from the top navigation menu in `More > Sources List`. + +![sources list](sources-list.png) diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/04-Downloading data.md b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/04-Downloading data.md new file mode 100644 index 000000000..b4d7b9454 --- /dev/null +++ b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/04-Downloading data.md @@ -0,0 +1,12 @@ +# Downloading data + +Data can be downloaded from the system from the map page. The final section in the map tools on the left has buttons for downloading various data, whether that is an image of the current selection of data or the raw data itself. + +The `Download map image` button will download an image file with the current state of the map showing only the data that results from the filters as well as an area polygon if one has been selected. + +The `Download filtered data` button will download a csv with the raw data relating to the filtered points and can be used for further analysis. + +An example of the input and output of the map image is shown below. + +![download map input](download-input.png) +![download output](download-output.png) \ No newline at end of file diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/area-filter.png b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/03-Exploring-the-data/area-filter.png new file mode 100644 index 000000000..a272ddee5 Binary files /dev/null and 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[news](pathname:///news) page. Navigate there either from the `News` button in the top navigation bar or from the `More news...` button on the home page. + +![news](../news.png) + +Only the summary is shown on the news page, clicking on the `More details` button will take you to the full article. + +![news details](news-details.png) diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/02-About us.md b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/02-About us.md new file mode 100644 index 000000000..9482e2bf7 --- /dev/null +++ b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/02-About us.md @@ -0,0 +1,5 @@ +# About us + +The [about](pathname:///about) page provides details about what the goals of the project are, who the team are, who our partners are and how to contact the team. + +![about](about.png) diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/about.png b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/about.png new file mode 100644 index 000000000..704777569 Binary files /dev/null and b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/about.png differ diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/news-details.png b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/news-details.png new file mode 100644 index 000000000..a6c9c84e1 Binary files /dev/null and b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/news-details.png differ diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/01-Signing up to the site.md b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/01-Signing up to the site.md new file mode 100644 index 000000000..200e872df --- /dev/null +++ b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/01-Signing up to the site.md @@ -0,0 +1,29 @@ +# Signing up to the site + +Most operations do not require a log in as the data is intended to be open. The time that a log in is required is when contributing data to the site, this means we can assign roles to users who are uploaders, those who are reviewers and those who are editors for the site. + +To sign up to the site, click on the `Login` button in the top right of the navigation menu. + +![log in](login.png) + +This will redirect you to the Vector Atlas' authentication provider, Auth0. Click on the `Sign up` option below the "Continue" button. + +![sign up](sign-up.png) + +Enter your email, create a password and click `Continue`. This will register you for the site and redirect you to the homepage but you won't have any roles by this point. + +You will receive an email from Auth0 asking you to verify your email address by clicking on a button in the email. Once this verification is done then the system team can assign roles. + +To request new roles, go to the `Settings` page in the user menu. + +![user settings](user-settings.png) + +On the user settings page click on the `Request additional roles` button to open the roles form. Select the roles that you require; uploader to upload data or model overlays, reviewer to review data before it is published, editor to edit news and species information, admin to be a site admin. + +Enter a reason for the request and then click submit request, this will then email the admins with your requested roles, Auth0 id and the reason for the request. They should then respond directly to you. + +![role request](role-request.png) + +Equally, you don't need to know the roles you need ahead of time. The system will display an unauthorised message is you try to perform an operation that you don't have the right role for. For example, if you navigate to the Data Hub page and select `Upload Model` then you will get the message that you are not an uploader and be directed to the user settings page. + +![not an uploader](not-an-uploader.png) \ No newline at end of file diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/02-Creating sources.md b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/02-Creating sources.md new file mode 100644 index 000000000..813531467 --- /dev/null +++ b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/02-Creating sources.md @@ -0,0 +1,5 @@ +# Creating sources + +To create a source you need the `uploader` role. Navigate to the `More > Add Source` option in the navigation menu. Fill in the details for a source and click `Submit`. Use the `Reset` button to clear the form. + +![Add source](add-source.png) \ No newline at end of file diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/03-Uploading data.md b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/03-Uploading data.md new file mode 100644 index 000000000..cafb3d48d --- /dev/null +++ b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/03-Uploading data.md @@ -0,0 +1,74 @@ +# DATA UPLOAD + +- Click on the `upload` link in the navigation bar. +- You will be directed to the upload interface. + +![Data Upload](UploadPage.png) + +### Downloading Templates + +- Templates help users upload data in a system-compatible format. +- Click on the `download arrow icons` on the right side of the panel to download templates. +- Four major templates are available: + - **First template**: Contains the "Occurrence" section only. + - **Second template**: Contains "Occurrence" and "Bionomics" sections. + - **Third template**: Contains "Occurrence" and "IR Bioassays" sections. + - **Final template**: Contains all three sections: "Occurrence," "Bionomics," and "Insecticide Resistance." + +![Templates section](templatesSection.png) + +### Uploading Data + +- After downloading and filling out the template: + - Click on the `Upload Data` icon. + - Follow the four-step upload process. +- **Step 1**: Select the dataset and enter details: + - Dataset title, description, authors, affiliated institutions, and DOI (if available). +- **Step 2**: Choose to either: + - Upload directly to blob storage for review, OR + - Continue with column matching and validation before uploading to blob storage. + +![Upload section](uploadSection.png) + +### Visualization of Uploaded Datasets by Reviewer Manager + +- Navigate to the `Uploaded Datasets` page: + - Click `More` in the top navigation and select `Datasets`. +- Filter datasets using checkboxes: + - Assigned to you. + - Pending assignment. + - Pending approval. + +![Uploaded Datasets](DatasetsList.png) + +### Assignment of Uploaded Datasets to Reviewers + +- Reviewer managers can assign datasets by clicking the three dots in the action column. +- **Before assignment**: Status is `Pending`. +- **After assigning a primary reviewer**: Status changes to `Primary Review`. + +![Assign Primary Review](AssignPrimaryReview.png) +![Primary Review Status](PrimaryreviewStatus.png) + +- Primary reviewers must review the dataset before re-uploading. +- The reviewer manager can assign a tertiary reviewer, changing the status to `Tertiary Review`. +- Reviewers can: + - Request a dataset re-upload from the primary reviewer. + - Send an email to the uploader or tertiary reviewer. + - Reject the dataset if it does not meet the required standards. + +![Assign Primary Review](AssignPrimaryReview.png) + +### Approval of Uploaded Datasets + +- Once all necessary steps are completed, the dataset can be approved by the reviewer manager. +- The reviewer manager can also: + - Validate the dataset before approval. + - Send an email for further communication. + +![Validate Dataset](ValidateDataset.png) + +### Ingestion to VA Database and Notifying the Uploader + +- Once the dataset is approved, it is automatically ingested into the Vector Atlas database. +- The dataset is stored in the database and appears on the map, making it visible to all users. diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/04-Reviewing data.md b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/04-Reviewing data.md new file mode 100644 index 000000000..5656a6ce3 --- /dev/null +++ b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/04-Reviewing data.md @@ -0,0 +1,17 @@ +# Reviewing data + +When data has been successfully uploaded, the system will send an email to all users with the `reviewer` role, containing a link to the review page: + +![Review page](review.png) + +To see the data uploaded, click the `DOWNLOAD DATA` button. This will download the data as a csv file. + +To leave any comments on the data for the uploader to address, type them into the `Review Comments` box and click `REQUEST CHANGES`. This will send an email to the uploader and all other reviewers with the comments. It will also change the status of the dataset to 'In review': + +![Review page In review](reviewed.png) + +To approve data, click on the `APPROVE DATA` button. This will send an email to the uploader and all other reviewers, saying that you have approved the data. + +Two approvals are needed to fully approve data - once two reviewers have approved, the data will be made public, and the review page will be updated: + +![Review page Approved](approved.png) diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/05-Uploading model outputs.md b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/05-Uploading model outputs.md new file mode 100644 index 000000000..b9ca6a74d --- /dev/null +++ b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/05-Uploading model outputs.md @@ -0,0 +1,19 @@ +# Uploading model overlays + +Uploading model overlays requires the `Uploader` role. + +To upload model overlays, go to the [data hub](pathname:///dataHub) page and click on `Upload Model`. + +![Data Hub page](datahub.png) + +The model upload page requires a display name, maximum value for the data and the model file itself. The display name is the name used on the map in overlays section of the map tools. + +The maximum value is needed because the overlay is transformed into a tiled version for use in the map - this involves re-scaling the data to match the grey scale colour map used by the system. It also means that two overlays can be compared fairly, suppose two overlays represent a percentage but the first has values between 0 and 10 but the second is between 0 and 90. If the system scaled off the maximum value in the data then it wouldn't be a fair comparison, by telling the system both have a maximum value of 100 then the two layers can be compared. + +The model file must currently be a geotiff so that we can support transformation into an mbtiles format. In the future there is planned support for shape files as well as external tile servers (via wms). + +![Model upload page](model-upload.png) + +Once you click `Upload model` then the system will notify when the file has been uploaded and that it's started to run the transformation, it will then notify again if the transformation is successful or fails. + +![Model transform](model-transform.png) diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/AssignPrimaryReview.png b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/AssignPrimaryReview.png new file mode 100644 index 000000000..d45c1e26c Binary files /dev/null and b/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/AssignPrimaryReview.png differ diff --git a/src/Help/i18n/fr/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/DatasetsList.png 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"description": "The label of the button to try again when the page crashed" + }, + "theme.NotFound.title": { + "message": "Página não encontrada", + "description": "The title of the 404 page" + }, + "theme.NotFound.p1": { + "message": "Não foi possível encontrar o que você está procurando.", + "description": "The first paragraph of the 404 page" + }, + "theme.NotFound.p2": { + "message": "Entre em contato com o proprietário do site que lhe trouxe para cá e lhe informe que o link está quebrado.", + "description": "The 2nd paragraph of the 404 page" + }, + "theme.admonition.note": { + "message": "note", + "description": "The default label used for the Note admonition (:::note)" + }, + "theme.admonition.tip": { + "message": "tip", + "description": "The default label used for the Tip admonition (:::tip)" + }, + "theme.admonition.danger": { + "message": "danger", + "description": "The default label used for the Danger admonition (:::danger)" + }, + "theme.admonition.info": { + "message": "info", + "description": "The default label used for the Info admonition (:::info)" + }, + "theme.admonition.caution": { + "message": "caution", + "description": "The default label used for the Caution admonition (:::caution)" + }, + "theme.AnnouncementBar.closeButtonAriaLabel": { + "message": "Fechar", + "description": "The ARIA label for close button of announcement bar" + }, + "theme.blog.archive.title": { + "message": "Arquivo", + "description": "The page & hero title of the blog archive page" + }, + "theme.blog.archive.description": { + "message": "Arquivo", + "description": "The page & hero description of the blog archive page" + }, + "theme.BackToTopButton.buttonAriaLabel": { + "message": "Volte para o topo", + "description": "The ARIA label for the back to top button" + }, + "theme.blog.paginator.navAriaLabel": { + "message": "Navegação da página de listagem do blog", + "description": "The ARIA label for the blog pagination" + }, + "theme.blog.paginator.newerEntries": { + "message": "Conteúdo mais novo", + "description": "The label used to navigate to the newer blog posts page (previous page)" + }, + "theme.blog.paginator.olderEntries": { + "message": "Conteúdo mais antigo", + "description": "The label used to navigate to the older blog posts page (next page)" + }, + "theme.blog.post.paginator.navAriaLabel": { + "message": "Navegação da página de postagem do blog", + "description": "The ARIA label for the blog posts pagination" + }, + "theme.blog.post.paginator.newerPost": { + "message": "Postagem mais nova", + "description": "The blog post button label to navigate to the newer/previous post" + }, + "theme.blog.post.paginator.olderPost": { + "message": "Postagem mais antiga", + "description": "The blog post button label to navigate to the older/next post" + }, + "theme.blog.post.plurals": { + "message": "Uma postagem|{count} postagens", + "description": "Pluralized label for \"{count} posts\". Use as much plural forms (separated by \"|\") as your language support (see https://www.unicode.org/cldr/cldr-aux/charts/34/supplemental/language_plural_rules.html)" + }, + "theme.blog.tagTitle": { + "message": "{nPosts} marcadas com \"{tagName}\"", + "description": "The title of the page for a blog tag" + }, + "theme.tags.tagsPageLink": { + "message": "Ver todas os Marcadores", + "description": "The label of the link targeting the tag list page" + }, + "theme.colorToggle.ariaLabel": { + "message": "Switch between dark and light mode (currently {mode})", + "description": "The ARIA label for the navbar color mode toggle" + }, + "theme.colorToggle.ariaLabel.mode.dark": { + "message": "dark mode", + "description": "The name for the dark color mode" + }, + "theme.colorToggle.ariaLabel.mode.light": { + "message": "light mode", + "description": "The name for the light color mode" + }, + "theme.docs.breadcrumbs.home": { + "message": "Home page", + "description": "The ARIA label for the home page in the breadcrumbs" + }, + "theme.docs.breadcrumbs.navAriaLabel": { + "message": "Breadcrumbs", + "description": "The ARIA label for the breadcrumbs" + }, + "theme.docs.DocCard.categoryDescription": { + "message": "{count} items", + "description": "The default description for a category card in the generated index about how many items this category includes" + }, + "theme.docs.paginator.navAriaLabel": { + "message": "Navigação das páginas de documentação", + "description": "The ARIA label for the docs pagination" + }, + "theme.docs.paginator.previous": { + "message": "Anterior", + "description": "The label used to navigate to the previous doc" + }, + "theme.docs.paginator.next": { + "message": "Próxima", + "description": "The label used to navigate to the next doc" + }, + "theme.docs.tagDocListPageTitle.nDocsTagged": { + "message": "Um documento selecionado|{count} documentos selecionados", + "description": "Pluralized label for \"{count} docs tagged\". Use as much plural forms (separated by \"|\") as your language support (see https://www.unicode.org/cldr/cldr-aux/charts/34/supplemental/language_plural_rules.html)" + }, + "theme.docs.tagDocListPageTitle": { + "message": "{nDocsTagged} com \"{tagName}\"", + "description": "The title of the page for a docs tag" + }, + "theme.docs.versionBadge.label": { + "message": "Version: {versionLabel}" + }, + "theme.docs.versions.unreleasedVersionLabel": { + "message": "Esta é uma documentação não lançada para {siteTitle} {versionLabel}.", + "description": "The label used to tell the user that he's browsing an unreleased doc version" + }, + "theme.docs.versions.unmaintainedVersionLabel": { + "message": "Esta é a documentação para {siteTitle} {versionLabel}, que não é mais mantida ativamente.", + "description": "The label used to tell the user that he's browsing an unmaintained doc version" + }, + "theme.docs.versions.latestVersionSuggestionLabel": { + "message": "Para a documentação atualizada, veja: {latestVersionLink} ({versionLabel}).", + "description": "The label used to tell the user to check the latest version" + }, + "theme.docs.versions.latestVersionLinkLabel": { + "message": "última versão", + "description": "The label used for the latest version suggestion link label" + }, + "theme.common.editThisPage": { + "message": "Editar essa página", + "description": "The link label to edit the current page" + }, + "theme.common.headingLinkTitle": { + "message": "Link direto para o título", + "description": "Title for link to heading" + }, + "theme.lastUpdated.atDate": { + "message": " em {date}", + "description": "The words used to describe on which date a page has been last updated" + }, + "theme.lastUpdated.byUser": { + "message": " por {user}", + "description": "The words used to describe by who the page has been last updated" + }, + "theme.lastUpdated.lastUpdatedAtBy": { + "message": "Última atualização {atDate}{byUser}", + "description": "The sentence used to display when a page has been last updated, and by who" + }, + "theme.navbar.mobileVersionsDropdown.label": { + "message": "Versions", + "description": "The label for the navbar versions dropdown on mobile view" + }, + "theme.common.skipToMainContent": { + "message": "Pular para o conteúdo principal", + "description": "The skip to content label used for accessibility, allowing to rapidly navigate to main content with keyboard tab/enter navigation" + }, + "theme.tags.tagsListLabel": { + "message": "Marcadores:", + "description": "The label alongside a tag list" + }, + "theme.blog.sidebar.navAriaLabel": { + "message": "Blog recent posts navigation", + "description": "The ARIA label for recent posts in the blog sidebar" + }, + "theme.CodeBlock.copied": { + "message": "Copiado", + "description": "The copied button label on code blocks" + }, + "theme.CodeBlock.copyButtonAriaLabel": { + "message": "Copiar código para a área de transferência", + "description": "The ARIA label for copy code blocks button" + }, + "theme.CodeBlock.copy": { + "message": "Copiar", + "description": "The copy button label on code blocks" + }, + "theme.CodeBlock.wordWrapToggle": { + "message": "Toggle word wrap", + "description": "The title attribute for toggle word wrapping button of code block lines" + }, + "theme.DocSidebarItem.toggleCollapsedCategoryAriaLabel": { + "message": "Toggle the collapsible sidebar category '{label}'", + "description": "The ARIA label to toggle the collapsible sidebar category" + }, + "theme.navbar.mobileLanguageDropdown.label": { + "message": "Languages", + "description": "The label for the mobile language switcher dropdown" + }, + "theme.TOCCollapsible.toggleButtonLabel": { + "message": "Nessa página", + "description": "The label used by the button on the collapsible TOC component" + }, + "theme.blog.post.readMore": { + "message": "Leia Mais", + "description": "The label used in blog post item excerpts to link to full blog posts" + }, + "theme.blog.post.readMoreLabel": { + "message": "Read more about {title}", + "description": "The ARIA label for the link to full blog posts from excerpts" + }, + "theme.blog.post.readingTime.plurals": { + "message": "Leitura de um minuto|Leitura de {readingTime} minutos", + "description": "Pluralized label for \"{readingTime} min read\". Use as much plural forms (separated by \"|\") as your language support (see https://www.unicode.org/cldr/cldr-aux/charts/34/supplemental/language_plural_rules.html)" + }, + "theme.docs.sidebar.collapseButtonTitle": { + "message": "Fechar painel lateral", + "description": "The title attribute for collapse button of doc sidebar" + }, + "theme.docs.sidebar.collapseButtonAriaLabel": { + "message": "Fechar painel lateral", + "description": "The title attribute for collapse button of doc sidebar" + }, + "theme.navbar.mobileSidebarSecondaryMenu.backButtonLabel": { + "message": "← Voltar para o menu principal", + "description": "The label of the back button to return to main menu, inside the mobile navbar sidebar secondary menu (notably used to display the docs sidebar)" + }, + "theme.docs.sidebar.expandButtonTitle": { + "message": "Expandir painel lateral", + "description": "The ARIA label and title attribute for expand button of doc sidebar" + }, + "theme.docs.sidebar.expandButtonAriaLabel": { + "message": "Expandir painel lateral", + "description": "The ARIA label and title attribute for expand button of doc sidebar" + } +} diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current.json b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current.json new file mode 100644 index 000000000..26357d0f1 --- /dev/null +++ b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current.json @@ -0,0 +1,18 @@ +{ + "version.label": { + "message": "Próximo", + "description": "The label for version current" + }, + "sidebar.tutorialSidebar.category.Exploring-the-data": { + "message": "Explorar os dados", + "description": "The label for category Exploring-the-data in sidebar tutorialSidebar" + }, + "sidebar.tutorialSidebar.category.Finding-out-about-the-project": { + "message": "Saber mais sobre o projeto", + "description": "The label for category Finding-out-about-the-project in sidebar tutorialSidebar" + }, + "sidebar.tutorialSidebar.category.Contributing-data-to-the-atlas": { + "message": "Contribuir com dados para o atlas", + "description": "The label for category Contributing-data-to-the-atlas in sidebar tutorialSidebar" + } +} \ No newline at end of file diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/01-intro.md b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/01-intro.md new file mode 100644 index 000000000..9edf7daf2 --- /dev/null +++ b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/01-intro.md @@ -0,0 +1,10 @@ +--- +slug: / +--- + +# Ajuda Vector Atlas + +Os mapas são uma ferramenta poderosa. Eles podem ilustrar a distribuição de espécies de vetores de mosquitos conhecidas por transmitir algumas das doenças mais debilitantes do mundo e destacar onde essas espécies não são mais suscetíveis aos inseticidas usados como método primário de controle. O Vector Atlas está construindo um hub de dados que conecta dados africanos de ocorrência de vetores, bionomia e resistência a inseticidas para fornecer acesso único a dados confiáveis e referenciados cruzados. + +## Como usar este guia +Os links à esquerda fornecem um guia pelos diferentes fluxos de trabalho do sistema. Se você está procurando um guia para começar a usar o sistema, comece com o [Guia de início rápido](/Quick-start). diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/02-Quick-start.md b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/02-Quick-start.md new file mode 100644 index 000000000..fd514e9d1 --- /dev/null +++ b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/02-Quick-start.md @@ -0,0 +1,29 @@ +# Guia de início rápido + +As seções à esquerda fornecem uma descrição mais detalhada dos diferentes caminhos pelo sistema, mas este guia fornece uma visão geral rápida do que o Vector Atlas pode fazer e como você pode explorar os dados. + +A página [Início](pathname:///) é o ponto de entrada inicial para os usuários. Você pode acessar o mapa com o botão `Explorar os dados`, ler as últimas notícias da equipe e saber mais sobre o projeto com o botão `Saiba mais`. + +![página inicial](homepage.png) + +Clique em `Explorar os dados` para navegar até a página do mapa. Isso exibe todos os dados publicados no sistema. + +Clique no ícone de filtro no menu de ferramentas do mapa à esquerda. + +![ferramentas do mapa](map-tools.png) + +Isso abre os filtros onde você pode escolher países e/ou espécies. Filtre por `Uganda` e a espécie `An. funestus` para ver como os dados são reduzidos no mapa. + +![dados filtrados](filtered-data.png) + +Você pode refinar ainda mais com a ferramenta de seleção de área. Ative o modo clicando no botão abaixo do filtro "Selecionar por área". + +![seleção de área](area-select.png) + +Expanda a seção de sobreposições e marque a caixa de seleção de uma sobreposição para ativá-la. + +![sobreposições](overlays.png) + +Role para baixo até a última seção de ferramentas do mapa e expanda a seção `Download`. Clique em `Baixar imagem do mapa` para obter uma cópia do seu mapa. + +![mapa baixado](downloaded-map.png) diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/01-Using the map.md b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/01-Using the map.md new file mode 100644 index 000000000..431aea95f --- /dev/null +++ b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/01-Using the map.md @@ -0,0 +1,63 @@ + Using the map + +The main feature of the Vector Atlas is the map view that can be used to explore the data that the Atlas holds; this data can be filtered, examined and downloaded. + +## Getting to the map +To get to the map click on the map on the homepage, or use the map link in the top navigation bar - both will redirect to the [/map](pathname:///map) route. + +![getting-to-the-data](getting-to-the-map.png "Getting to the data") + +The map tools are in the menu on the left and include tools for filtering, displaying overlays, altering the display of base layers and downloading data. + + +## Filtering data + +Multiple data filters can be applied using the filters available in the first section of the tools on the left. Data can be filtered by: +- country, +- species, +- season, +- control, +- whether adult data is present, +- whether larval data is present, +- the time range of the data (down to month and year) +- selected area (more details below) + +The different filters act as an AND condition, e.g. selecting Uganda and An. arabiensis gets only the data in Uganda with An. arabiensis species. However, within an individual filter it acts as an OR condition, e.g. selecting Uganda and Sudan in the countries filter will get all data for both countries. + +![filters](filters.png) + +### Area select mode + +Data can also be filtered by area; to activate the area select mode, click on the mode button below the "Select by area" filter. + +![area mode](area-select-mode.png) + +This changes the mode on the map so each click is a point on the boundary of the selection polygon, clicking on the original point again will complete the polygon. Once a polygon is completed then the data will be filtered to that area. A new polygon can be created after the first is completed, the first polygon is removed once the second is completed - i.e there is only ever one polygon at once. + +![area filter](area-filter.png) + +Clicking the area mode button again turns the mode off but doesn't remove the selected polygon. This means you can click on points inside the polygon to get more information. Clicking on the `Remove selection` button will clear the polygon and remove any area filter on the data. + +## Getting more information about points + +Clicking on points on the map opens the information panel on the right showing extra details about each of the points under the click (which could be many points close together). + +![point details](point-details.png) + +The details panel can be closed with the close button in the top left of the panel. + +## Overlaying surfaces + +Overlays provide various modelling outputs that can be visualised together and combined with the data to find new insights. Each overlay can be turned on and off independently. + +![overlays](overlays.png) + +Currently the order of the overlays can't be changed but this is a planned feature for the future. + + + +## Altering the base map + +The base map can be altered by turning features and layers on or off. This provides the capability to customise the visualisation that can then be downloaded for reports and publications. + +![changing the base map](changing-base-map.png) diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/02-Learning about species.md b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/02-Learning about species.md new file mode 100644 index 000000000..b626a8617 --- /dev/null +++ b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/02-Learning about species.md @@ -0,0 +1,9 @@ +# Learning about different species + +The Vector Atlas includes a lot of information about the different species of mosquitos on the [Species list](pathname:///species) page, this can be found from the top navigation menu under `More > Species List`. This includes information about the species, its history and distribution. + +![species list](species-list.png) + +Clicking on one of the items in the list will take you to a page with more details about that given species. + +![species details](species-details.png) diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/03-Listing the sources.md b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/03-Listing the sources.md new file mode 100644 index 000000000..f5a1ad6ea --- /dev/null +++ b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/03-Listing the sources.md @@ -0,0 +1,5 @@ +# Listing the sources + +The Vector Atlas tracks the sources used in the data within the system and lists them on the [Sources](pathname:///sources) page, this can be navigated to from the top navigation menu in `More > Sources List`. + +![sources list](sources-list.png) diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/04-Downloading data.md b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/04-Downloading data.md new file mode 100644 index 000000000..b4d7b9454 --- /dev/null +++ b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/04-Downloading data.md @@ -0,0 +1,12 @@ +# Downloading data + +Data can be downloaded from the system from the map page. The final section in the map tools on the left has buttons for downloading various data, whether that is an image of the current selection of data or the raw data itself. + +The `Download map image` button will download an image file with the current state of the map showing only the data that results from the filters as well as an area polygon if one has been selected. + +The `Download filtered data` button will download a csv with the raw data relating to the filtered points and can be used for further analysis. + +An example of the input and output of the map image is shown below. + +![download map input](download-input.png) +![download output](download-output.png) \ No newline at end of file diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/area-filter.png b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/03-Exploring-the-data/area-filter.png new file mode 100644 index 000000000..a272ddee5 Binary files /dev/null and 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[news](pathname:///news) page. Navigate there either from the `News` button in the top navigation bar or from the `More news...` button on the home page. + +![news](../news.png) + +Only the summary is shown on the news page, clicking on the `More details` button will take you to the full article. + +![news details](news-details.png) diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/02-About us.md b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/02-About us.md new file mode 100644 index 000000000..9482e2bf7 --- /dev/null +++ b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/02-About us.md @@ -0,0 +1,5 @@ +# About us + +The [about](pathname:///about) page provides details about what the goals of the project are, who the team are, who our partners are and how to contact the team. + +![about](about.png) diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/about.png b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/about.png new file mode 100644 index 000000000..704777569 Binary files /dev/null and b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/about.png differ diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/news-details.png b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/news-details.png new file mode 100644 index 000000000..a6c9c84e1 Binary files /dev/null and b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/04-Finding-out-about-the-project/news-details.png differ diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/01-Signing up to the site.md b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/01-Signing up to the site.md new file mode 100644 index 000000000..200e872df --- /dev/null +++ b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/01-Signing up to the site.md @@ -0,0 +1,29 @@ +# Signing up to the site + +Most operations do not require a log in as the data is intended to be open. The time that a log in is required is when contributing data to the site, this means we can assign roles to users who are uploaders, those who are reviewers and those who are editors for the site. + +To sign up to the site, click on the `Login` button in the top right of the navigation menu. + +![log in](login.png) + +This will redirect you to the Vector Atlas' authentication provider, Auth0. Click on the `Sign up` option below the "Continue" button. + +![sign up](sign-up.png) + +Enter your email, create a password and click `Continue`. This will register you for the site and redirect you to the homepage but you won't have any roles by this point. + +You will receive an email from Auth0 asking you to verify your email address by clicking on a button in the email. Once this verification is done then the system team can assign roles. + +To request new roles, go to the `Settings` page in the user menu. + +![user settings](user-settings.png) + +On the user settings page click on the `Request additional roles` button to open the roles form. Select the roles that you require; uploader to upload data or model overlays, reviewer to review data before it is published, editor to edit news and species information, admin to be a site admin. + +Enter a reason for the request and then click submit request, this will then email the admins with your requested roles, Auth0 id and the reason for the request. They should then respond directly to you. + +![role request](role-request.png) + +Equally, you don't need to know the roles you need ahead of time. The system will display an unauthorised message is you try to perform an operation that you don't have the right role for. For example, if you navigate to the Data Hub page and select `Upload Model` then you will get the message that you are not an uploader and be directed to the user settings page. + +![not an uploader](not-an-uploader.png) \ No newline at end of file diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/02-Creating sources.md b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/02-Creating sources.md new file mode 100644 index 000000000..813531467 --- /dev/null +++ b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/02-Creating sources.md @@ -0,0 +1,5 @@ +# Creating sources + +To create a source you need the `uploader` role. Navigate to the `More > Add Source` option in the navigation menu. Fill in the details for a source and click `Submit`. Use the `Reset` button to clear the form. + +![Add source](add-source.png) \ No newline at end of file diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/03-Uploading data.md b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/03-Uploading data.md new file mode 100644 index 000000000..cafb3d48d --- /dev/null +++ b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/03-Uploading data.md @@ -0,0 +1,74 @@ +# DATA UPLOAD + +- Click on the `upload` link in the navigation bar. +- You will be directed to the upload interface. + +![Data Upload](UploadPage.png) + +### Downloading Templates + +- Templates help users upload data in a system-compatible format. +- Click on the `download arrow icons` on the right side of the panel to download templates. +- Four major templates are available: + - **First template**: Contains the "Occurrence" section only. + - **Second template**: Contains "Occurrence" and "Bionomics" sections. + - **Third template**: Contains "Occurrence" and "IR Bioassays" sections. + - **Final template**: Contains all three sections: "Occurrence," "Bionomics," and "Insecticide Resistance." + +![Templates section](templatesSection.png) + +### Uploading Data + +- After downloading and filling out the template: + - Click on the `Upload Data` icon. + - Follow the four-step upload process. +- **Step 1**: Select the dataset and enter details: + - Dataset title, description, authors, affiliated institutions, and DOI (if available). +- **Step 2**: Choose to either: + - Upload directly to blob storage for review, OR + - Continue with column matching and validation before uploading to blob storage. + +![Upload section](uploadSection.png) + +### Visualization of Uploaded Datasets by Reviewer Manager + +- Navigate to the `Uploaded Datasets` page: + - Click `More` in the top navigation and select `Datasets`. +- Filter datasets using checkboxes: + - Assigned to you. + - Pending assignment. + - Pending approval. + +![Uploaded Datasets](DatasetsList.png) + +### Assignment of Uploaded Datasets to Reviewers + +- Reviewer managers can assign datasets by clicking the three dots in the action column. +- **Before assignment**: Status is `Pending`. +- **After assigning a primary reviewer**: Status changes to `Primary Review`. + +![Assign Primary Review](AssignPrimaryReview.png) +![Primary Review Status](PrimaryreviewStatus.png) + +- Primary reviewers must review the dataset before re-uploading. +- The reviewer manager can assign a tertiary reviewer, changing the status to `Tertiary Review`. +- Reviewers can: + - Request a dataset re-upload from the primary reviewer. + - Send an email to the uploader or tertiary reviewer. + - Reject the dataset if it does not meet the required standards. + +![Assign Primary Review](AssignPrimaryReview.png) + +### Approval of Uploaded Datasets + +- Once all necessary steps are completed, the dataset can be approved by the reviewer manager. +- The reviewer manager can also: + - Validate the dataset before approval. + - Send an email for further communication. + +![Validate Dataset](ValidateDataset.png) + +### Ingestion to VA Database and Notifying the Uploader + +- Once the dataset is approved, it is automatically ingested into the Vector Atlas database. +- The dataset is stored in the database and appears on the map, making it visible to all users. diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/04-Reviewing data.md b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/04-Reviewing data.md new file mode 100644 index 000000000..5656a6ce3 --- /dev/null +++ b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/04-Reviewing data.md @@ -0,0 +1,17 @@ +# Reviewing data + +When data has been successfully uploaded, the system will send an email to all users with the `reviewer` role, containing a link to the review page: + +![Review page](review.png) + +To see the data uploaded, click the `DOWNLOAD DATA` button. This will download the data as a csv file. + +To leave any comments on the data for the uploader to address, type them into the `Review Comments` box and click `REQUEST CHANGES`. This will send an email to the uploader and all other reviewers with the comments. It will also change the status of the dataset to 'In review': + +![Review page In review](reviewed.png) + +To approve data, click on the `APPROVE DATA` button. This will send an email to the uploader and all other reviewers, saying that you have approved the data. + +Two approvals are needed to fully approve data - once two reviewers have approved, the data will be made public, and the review page will be updated: + +![Review page Approved](approved.png) diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/05-Uploading model outputs.md b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/05-Uploading model outputs.md new file mode 100644 index 000000000..b9ca6a74d --- /dev/null +++ b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/05-Uploading model outputs.md @@ -0,0 +1,19 @@ +# Uploading model overlays + +Uploading model overlays requires the `Uploader` role. + +To upload model overlays, go to the [data hub](pathname:///dataHub) page and click on `Upload Model`. + +![Data Hub page](datahub.png) + +The model upload page requires a display name, maximum value for the data and the model file itself. The display name is the name used on the map in overlays section of the map tools. + +The maximum value is needed because the overlay is transformed into a tiled version for use in the map - this involves re-scaling the data to match the grey scale colour map used by the system. It also means that two overlays can be compared fairly, suppose two overlays represent a percentage but the first has values between 0 and 10 but the second is between 0 and 90. If the system scaled off the maximum value in the data then it wouldn't be a fair comparison, by telling the system both have a maximum value of 100 then the two layers can be compared. + +The model file must currently be a geotiff so that we can support transformation into an mbtiles format. In the future there is planned support for shape files as well as external tile servers (via wms). + +![Model upload page](model-upload.png) + +Once you click `Upload model` then the system will notify when the file has been uploaded and that it's started to run the transformation, it will then notify again if the transformation is successful or fails. + +![Model transform](model-transform.png) diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/AssignPrimaryReview.png b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/AssignPrimaryReview.png new file mode 100644 index 000000000..d45c1e26c Binary files /dev/null and b/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/AssignPrimaryReview.png differ diff --git a/src/Help/i18n/pt/docusaurus-plugin-content-docs/current/05-Contributing-data-to-the-atlas/DatasetsList.png 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