Issues

• use_cell_types = False is not working correctly.

  dpeerlab/spectra#62 · Filter by author nbnbhwyy opened on Feb 6, 2026

• pseudobulk datasets

  dpeerlab/spectra#61 · Filter by author andreyurch opened on Feb 6, 2026

• Applicability to cancer data

  dpeerlab/spectra#57 · Filter by author Thapeachydude opened on Apr 1, 2025
  2

• Generating Spectra factors for test set

  dpeerlab/spectra#55 · Filter by author mariemoullet opened on Mar 2, 2025
  1

• Model Assessment/Convergence

  dpeerlab/spectra#53 · Filter by author sanjayontheweb opened on Feb 6, 2025

• spc.est_spectra returns error "AttributeError: 'Series' object has no attribute 'nonzero'"

  dpeerlab/spectra#52 · Filter by author halterc opened on Feb 5, 2025
  2

• Request for paused training

  dpeerlab/spectra#51 · Filter by author Nusob888 opened on Jan 6, 2025

• Epoch error

  dpeerlab/spectra#50 · Filter by author theheking opened on Nov 28, 2024
  2

• Cross-species transfer learning

  dpeerlab/spectra#49 · Filter by author HarteNuss opened on Sep 5, 2024

• factor importance and information scores

  dpeerlab/spectra#47 · Filter by author bpkwee opened on Jun 11, 2024
  6

• run adata.uns['SPECTRA_overlap'].index, and there are some factors without name?

  dpeerlab/spectra#46 · Filter by author Joyjoyjoyc opened on May 18, 2024
  1

• Specific factors vary based on global.

  dpeerlab/spectra#45 · Filter by author ktroule opened on May 13, 2024
  2

• Computing factor importance scores

  dpeerlab/spectra#44 · Filter by author Sandeep-S-K opened on May 12, 2024

• The meaning of gene weight?

  dpeerlab/spectra#42 · Filter by author yizhang-zoey opened on Mar 22, 2024
  1

• Does Spectra accept processed expression matrix as the input?

  dpeerlab/spectra#41 · Filter by author yizhang-zoey opened on Mar 15, 2024
  3

• GPU tutorial?

  dpeerlab/spectra#39 · Filter by author caitsimop opened on Jan 9, 2024
  3

• Number of cores allocation

  dpeerlab/spectra#38 · Filter by author WuRAFY opened on Dec 19, 2023
  2

• UnboundLocalError: local variable 'is_global' referenced before assignment

  dpeerlab/spectra#34 · Filter by author GabyBG opened on Nov 7, 2023
  2

• unbound local variable is_global

  dpeerlab/spectra#33 · Filter by author joshdempster opened on Nov 7, 2023
  1

• use_cell_types not implemented in Spectra_gpu

  dpeerlab/spectra#32 · Filter by author ccruizm opened on Oct 30, 2023
  2

• issue with self.rho = nn.ParameterDict(self.rho)

  dpeerlab/spectra#31 · Filter by author deanslee opened on Oct 21, 2023
  2

• TypeError: SPECTRA_Model.train() got an unexpected keyword argument 'label_factors'

  dpeerlab/spectra#30 · Filter by author bitcometz opened on Sep 27, 2023
  1

• spc.est_spectra stalls and go to next step after some epochs

  dpeerlab/spectra#23 · Filter by author kvshams opened on Jun 16, 2023

• GPU implementation

  dpeerlab/spectra#21 · Filter by author ccruizm opened on Jun 13, 2023
  16

• Monitoring training

  dpeerlab/spectra#18 · Filter by author cpuritz opened on May 5, 2023
  2