StrInt/session_info.txt at rev · deepomicslab/StrInt · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
R version 4.2.0 (2022-04-22)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: Ubuntu 22.04.5 LTS

Matrix products: default
BLAS/LAPACK: /home/wanwang6/miniconda3/envs/strint/lib/libopenblasp-r0.3.29.so

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8
 [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8
 [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C
[10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
[1] SpaTalk_1.0       doParallel_1.0.17 iterators_1.0.14  foreach_1.5.2
[5] ggalluvial_0.12.5 ggplot2_3.5.2

loaded via a namespace (and not attached):
  [1] Seurat_5.3.0           Rtsne_0.17             ggsignif_0.6.4
  [4] deldir_2.0-4           ggridges_0.5.6         fs_1.6.6
  [7] RcppHNSW_0.6.0         spatstat.data_3.1-6    ggpubr_0.6.1
 [10] listenv_0.9.1          farver_2.1.2           ggrepel_0.9.6
 [13] scatterpie_0.2.5       RSpectra_0.16-2        codetools_0.2-20
 [16] splines_4.2.0          polyclip_1.10-7        Formula_1.2-5
 [19] spam_2.11-1            jsonlite_2.0.0         broom_1.0.9
 [22] ica_1.0-3              cluster_2.1.8.1        png_0.1-8
 [25] pheatmap_1.0.13        uwot_0.2.3             ggforce_0.5.0
 [28] shiny_1.11.1           sctransform_0.4.2      spatstat.sparse_3.1-0
 [31] readr_2.1.5            compiler_4.2.0         httr_1.4.7
 [34] backports_1.5.0        SeuratObject_5.1.0     Matrix_1.6-5
 [37] fastmap_1.2.0          lazyeval_0.2.2         cli_3.6.5
 [40] tweenr_2.0.3           later_1.4.2            prettyunits_1.2.0
 [43] htmltools_0.5.8.1      tools_4.2.0            igraph_2.1.4
 [46] dotCall64_1.2          gtable_0.3.6           glue_1.8.0
 [49] RANN_2.6.2             reshape2_1.4.4         dplyr_1.1.4
 [52] Rcpp_1.1.0             carData_3.0-5          scattermore_1.2
 [55] spatstat.univar_3.1-4  vctrs_0.6.5            spatstat.explore_3.5-2
 [58] nlme_3.1-168           progressr_0.15.1       lmtest_0.9-40
 [61] spatstat.random_3.4-1  stringr_1.5.1          globals_0.18.0
 [64] mime_0.13              miniUI_0.1.2           lifecycle_1.0.4
 [67] irlba_2.3.5.1          rstatix_0.7.2          goftest_1.2-3
 [70] NNLM_0.4.4             future_1.67.0          MASS_7.3-58.1
 [73] zoo_1.8-14             scales_1.4.0           hms_1.1.3
 [76] promises_1.3.3         spatstat.utils_3.1-5   RColorBrewer_1.1-3
 [79] reticulate_1.43.0      pbapply_1.7-4          gridExtra_2.3
 [82] ggfun_0.2.0            yulab.utils_0.2.0      ggExtra_0.10.1
 [85] stringi_1.8.7          fastDummies_1.7.5      rlang_1.1.6
 [88] pkgconfig_2.0.3        matrixStats_1.5.0      lattice_0.22-7
 [91] ROCR_1.0-11            purrr_1.1.0            tensor_1.5.1
 [94] patchwork_1.3.1        htmlwidgets_1.6.4      cowplot_1.2.0
 [97] tidyselect_1.2.1       parallelly_1.45.1      RcppAnnoy_0.0.22
[100] plyr_1.8.9             magrittr_2.0.3         R6_2.6.1
[103] generics_0.1.4         pillar_1.11.0          withr_3.0.2
[106] fitdistrplus_1.2-4     survival_3.8-3         abind_1.4-8
[109] sp_2.2-0               tibble_3.3.0           future.apply_1.20.0
[112] car_3.1-3              crayon_1.5.3           KernSmooth_2.23-26
[115] spatstat.geom_3.5-0    plotly_4.11.0          tzdb_0.5.0
[118] progress_1.2.3         grid_4.2.0             data.table_1.17.8
[121] digest_0.6.37          xtable_1.8-4           tidyr_1.3.1
[124] httpuv_1.6.16          viridisLite_0.4.2