JOSS paper corrections #116

	name: Ubuntu

	on:
	pull_request:

	jobs:
	run-pycopm-ubuntu:
	permissions:
	contents: read
	timeout-minutes: 30
	runs-on: ubuntu-26.04

	steps:
	- uses: actions/checkout@v5

	- name: Install Flow Simulator and ert dependency
	run: \|
	sudo apt-get update
	sudo apt-get install software-properties-common mpi-default-bin libhdf5-dev freeglut3-dev
	sudo apt-add-repository ppa:opm/ppa
	sudo apt-get update
	sudo apt-get install libopm-simulators-bin

	- name: Install python requirements
	run: \|
	python3 -m venv vpycopm
	. vpycopm/bin/activate
	echo "$PWD/vpycopm/bin" >> $GITHUB_PATH
	pip install --upgrade pip setuptools wheel
	pip install -e .
	pip install -r dev-requirements.txt

	- name: Check code style and linting
	run: \|
	black --target-version py314 src/ tests/ --check
	pylint src/ tests/
	ruff check src/ tests/
	mypy --ignore-missing-imports src/ tests/

	- name: Run tests
	run: \|
	pytest --cov=pycopm --cov-report term-missing --basetemp=test_outputs tests/ --exitfirst

	- name: Run hello world example
	run: \|
	pycopm -i examples/decks/HELLO_WORLD.DATA -c 5,5,1 -m all -o output

	- name: Check if hello world example succeded
	run: \|
	file="output/HELLO_WORLD_PYCOPM.EGRID"
	if [ -f "$file" ]; then
	echo "pycopm succeeded"
	else
	echo "pycopm failed"
	exit 1
	fi

	- name: Build documentation
	run: \|
	cd docs
	make html SPHINXOPTS="-W"

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