diff --git a/jes_sim.py b/jes_sim.py
index e396e72..5814615 100644
--- a/jes_sim.py
+++ b/jes_sim.py
@@ -78,7 +78,7 @@ def getCalmStates(self, gen, startIndex, endIndex, frameCount, calmingRun):
             
     def getStartingNodeCoor(self, gen, startIndex, endIndex, fromCalmState):
         COUNT = endIndex-startIndex
-        n = np.zeros((COUNT,self.CH+1,self.CW+1,self.node_coor_count))
+        n = np.zeros((COUNT,self.CW+1,self.CH+1,self.node_coor_count))
         if not fromCalmState or self.creatures[gen][0].calmState is None:
             # create grid of nodes along perfect gridlines
             coorGrid = np.mgrid[0:self.CW+1,0:self.CH+1]
@@ -93,10 +93,10 @@ def getStartingNodeCoor(self, gen, startIndex, endIndex, fromCalmState):
 
     def getMuscleArray(self, gen, startIndex, endIndex):
         COUNT = endIndex-startIndex
-        m = np.zeros((COUNT,self.CH,self.CW,self.beats_per_cycle,self.traits_per_box+1)) # add one trait for diagonal length.
+        m = np.zeros((COUNT,self.CW,self.CH,self.beats_per_cycle,self.traits_per_box+1)) # add one trait for diagonal length.
         DNA_LEN = self.CH*self.CW*self.beats_per_cycle*self.traits_per_box
         for c in range(startIndex,endIndex):
-            dna = self.creatures[gen][c].dna[0:DNA_LEN].reshape(self.CH,self.CW,self.beats_per_cycle,self.traits_per_box)
+            dna = self.creatures[gen][c].dna[0:DNA_LEN].reshape(self.CW,self.CH,self.beats_per_cycle,self.traits_per_box)
             m[c-startIndex,:,:,:,:self.traits_per_box] = 1.0+(dna)/3.0
         m[:,:,:,:,3] = np.sqrt(np.square(m[:,:,:,:,0])+np.square(m[:,:,:,:,1])) # Set diagonal tendons
         return m
diff --git a/jes_ui.py b/jes_ui.py
index 02c536b..91c39c4 100644
--- a/jes_ui.py
+++ b/jes_ui.py
@@ -15,9 +15,9 @@ def __init__(self, _W_W, _W_H, _MOVIE_SINGLE_DIM, _GRAPH_COOR, _SAC_COOR, _GENEA
         self.sliderList = []
         self.buttonList = []
         pygame.font.init()
-        self.bigFont = pygame.font.Font('C:/Users/caryk/AppData/Local/Microsoft/Windows/Fonts/Jygquip 1.ttf', 60)
-        self.smallFont = pygame.font.Font('C:/Users/caryk/AppData/Local/Microsoft/Windows/Fonts/Jygquip 1.ttf', 30)
-        self.tinyFont = pygame.font.Font('C:/Users/caryk/AppData/Local/Microsoft/Windows/Fonts/Jygquip 1.ttf', 21)
+        self.bigFont = pygame.font.Font('visuals/Arial.ttf', 60)
+        self.smallFont = pygame.font.Font('visuals/Arial.ttf', 30)
+        self.tinyFont = pygame.font.Font('visuals/Arial.ttf', 21)
         self.BACKGROUND_PIC = pygame.image.load("visuals/background.png")
         self.W_W = _W_W
         self.W_H = _W_H
@@ -331,7 +331,7 @@ def doMovies(self):
             if self.sample_frames >= self.sim.trial_time+self.SAMPLE_FREEZE_TIME:
                 self.startSampleHelper()
         for i in range(L):
-            if self.visualSimMemory[i][2] < self.sim.trial_time:
+            if self.visualSimMemory[i][2] < self.sim.trial_time:
                 self.visualSimMemory[i] = self.sim.simulateRun(self.visualSimMemory[i], 1, False)
             DIM = arrayIntMultiply(self.MOVIE_SINGLE_DIM, MSCALE[self.CLH[0]])
             self.movieScreens[i] = pygame.Surface(DIM, pygame.SRCALPHA, 32)
diff --git a/utils.py b/utils.py
index 980d473..0ef5677 100644
--- a/utils.py
+++ b/utils.py
@@ -103,8 +103,6 @@ def applyMuscles(n,m,muscle_coef):
     MAs = [None]*6
     segments = [[0,0,1,0],[0,1,1,1],
     [0,0,0,1],[1,0,1,1],[0,0,1,1],[0,1,1,0]]
-    segments2 = [[0,0,1,0],[0,1,1,1],
-    [0,0,0,1],[1,0,1,1],[0,0,1,1],[0,1,1,0]]
     
     
     MAs[0] = getMuscleAttraction(xNeighborDists[:,:,:-1],m[:,:,:,0],muscle_coef)
@@ -127,8 +125,8 @@ def applyMuscles(n,m,muscle_coef):
     
     for dire in range(6):
         s = segments[dire]
-        sli1 = n[:,s[0]:s[0]+CW,s[1]:s[1]+CW]
-        sli2 = n[:,s[2]:s[2]+CH,s[3]:s[3]+CH]
+        sli1 = n[:,s[0]:s[0]+CW,s[1]:s[1]+CH]
+        sli2 = n[:,s[2]:s[2]+CW,s[3]:s[3]+CH]
         
         delta_x = sli1[:,:,:,0]-sli2[:,:,:,0]
         delta_y = sli1[:,:,:,1]-sli2[:,:,:,1]
@@ -137,10 +135,10 @@ def applyMuscles(n,m,muscle_coef):
         delta_nx = delta_x/delta_magnitude
         delta_ny = delta_y/delta_magnitude
         
-        n[:,s[0]:s[0]+CW,s[1]:s[1]+CW,2] += delta_nx*MAs[dire]
-        n[:,s[0]:s[0]+CW,s[1]:s[1]+CW,3] += delta_ny*MAs[dire]
-        n[:,s[2]:s[2]+CH,s[3]:s[3]+CH,2] -= delta_nx*MAs[dire]
-        n[:,s[2]:s[2]+CH,s[3]:s[3]+CH,3] -= delta_ny*MAs[dire]
+        n[:,s[0]:s[0]+CW,s[1]:s[1]+CH,2] += delta_nx*MAs[dire]
+        n[:,s[0]:s[0]+CW,s[1]:s[1]+CH,3] += delta_ny*MAs[dire]
+        n[:,s[2]:s[2]+CW,s[3]:s[3]+CH,2] -= delta_nx*MAs[dire]
+        n[:,s[2]:s[2]+CW,s[3]:s[3]+CH,3] -= delta_ny*MAs[dire]
         
 def getMuscleAttraction(dists,m,muscle_coef):
     return (m-dists)*muscle_coef