diff --git a/alphabase/constants/const_files/pg_reader.yaml b/alphabase/constants/const_files/pg_reader.yaml index bc637830..9d86db1e 100644 --- a/alphabase/constants/const_files/pg_reader.yaml +++ b/alphabase/constants/const_files/pg_reader.yaml @@ -54,3 +54,67 @@ alphapept: raw: "^.*(?" + # Do not match "Intensity" (sum across all samples) + # Do not match "Intensity L " (or M/H), from TMT experiments + "raw": "^Intensity(?!\\s[LHM]\\s).+$" # Raw intensity-based quantification + "lfq": "^LFQ intensity(?!\\s[LHM]\\s).+$" # LFQ intensity-based quantification + "ibaq": "^iBAQ(?!\\s[LHM]\\s).+$" # Intensity-Based Absolute Quantification + + +# Based on Spectronaut 20.0 Run Pivot Report (Page 80/81) +# https://biognosys.com/content/uploads/2025/06/Spectronaut-20-Manual.pdf +spectronaut: + reader_type: "spectronaut" + column_mapping: + "proteins": ["PG.ProteinNames", "PG_ProteinGroups"] + "genes": "PG.Genes" + "uniprot_ids": "PG.UniProtIds" + measurement_regex: + # Spectronaut marks sample columns with "[number]..." + # At the beginning (^) of the string, match open square bracket "\\[", any number of digits "[0-9]+", closed square bracket "\\]" + # Square brackets are special characters -> need to be escaped with "\[". The backslash itself needs to be escaped -> "\\[" + "default": "^\\[[0-9]+\\]" + + +# https://fragpipe.nesvilab.org/docs/tutorial_fragpipe_outputs.html#proteintsv +fragpipe: + reader_type: "fragpipe" + column_mapping: + "proteins": "Entry Name" + "uniprot_ids": "Protein ID" + "genes": "Gene Names" + "description": "Description" + measurement_regex: + "raw": "Intensity$" + "razor": "Razor Intensity$" + "unique": "Unique Intensity$" + "total": "Total Intensity$" + "lfq": "MaxLFQ Intensity$" + "lfq_unique": "MaxLFQ Unique Intensity$" + "lfq_total": "MaxLFQ Total Intensity$" + + +# mzTab +# version 2.0.0 (2019-03) +mztab: + reader_type: "mztab" + column_mapping: + "uniprot_ids": "accession" + "description": "description" + "source_db": "database" + measurement_regex: + "assay": "^protein_abundance_assay\\[[0-9]+\\]" # The protein's abundance as measured in the given assay through whatever technique was employed + "study_variable": "^protein_abundance_study_variable\\[[0-9]+\\]" # The protein's abundance as measured in the given study variable (condition) through whatever technique was employed diff --git a/alphabase/pg_reader/__init__.py b/alphabase/pg_reader/__init__.py index f7c31006..c16e3971 100644 --- a/alphabase/pg_reader/__init__.py +++ b/alphabase/pg_reader/__init__.py @@ -1,11 +1,19 @@ from .alphadia_pg_reader import AlphaDiaPGReader from .alphapept_pg_reader import AlphaPeptPGReader from .diann_pg_reader import DiannPGReader +from .fragpipe_pg_reader import FragPipePGReader +from .maxquant_pg_reader import MaxQuantPGReader +from .mztab_pg_reader import MZTabPGReader from .pg_reader import pg_reader_provider +from .spectronaut_reader import SpectronautPGReader __all__ = [ "pg_reader_provider", "AlphaDiaPGReader", "DiannPGReader", "AlphaPeptPGReader", + "MaxQuantPGReader", + "SpectronautPGReader", + "FragPipePGReader", + "MZTabPGReader", ] diff --git a/alphabase/pg_reader/alphapept_pg_reader.py b/alphabase/pg_reader/alphapept_pg_reader.py index 705cb254..c915e1e7 100644 --- a/alphabase/pg_reader/alphapept_pg_reader.py +++ b/alphabase/pg_reader/alphapept_pg_reader.py @@ -110,7 +110,7 @@ def __init__( Parameters ---------- column_mapping - Dictionary mapping alphabase column names (keys) to AlphaPep column names (values). + Dictionary mapping alphabase column names (keys) to AlphaPept column names (values). If `None`, uses default mapping from configuration file. measurement_regex Pattern to select quantity columns diff --git a/alphabase/pg_reader/fragpipe_pg_reader.py b/alphabase/pg_reader/fragpipe_pg_reader.py new file mode 100644 index 00000000..454a49a3 --- /dev/null +++ b/alphabase/pg_reader/fragpipe_pg_reader.py @@ -0,0 +1,47 @@ +"""FragPipe protein group reader.""" + +from typing import Literal, Optional, Union + +from .pg_reader import PGReaderBase, pg_reader_provider + + +class FragPipePGReader(PGReaderBase): + """Reader for `protein.tsv` reports from FragPipe. + + Example: + ------- + Per default, the reader will return the raw intensities from the `razor` method. Additional protein features are stored + in the dataframe index, samples are stored as columns. + + .. code-block:: python + + # Get raw intensities + reader = FragPipePGReader() + results = reader.import_file(download_path) + + + References: + ---------- + - FragPipe Documentation https://fragpipe.nesvilab.org/docs/tutorial_fragpipe_outputs.html#proteintsv + + """ + + _reader_type: str = "fragpipe" + + def __init__( # noqa: D107 inherited from base class + self, + *, + column_mapping: Optional[dict[str, str]] = None, + measurement_regex: Union[ + Literal[ + "raw", "razor", "unique", "total", "lfq", "lfq_unique", "lfq_total" + ], + None, + ] = "razor", + ): + super().__init__( + column_mapping=column_mapping, measurement_regex=measurement_regex + ) + + +pg_reader_provider.register_reader("fragpipe", reader_class=FragPipePGReader) diff --git a/alphabase/pg_reader/maxquant_pg_reader.py b/alphabase/pg_reader/maxquant_pg_reader.py new file mode 100644 index 00000000..93a7d80e --- /dev/null +++ b/alphabase/pg_reader/maxquant_pg_reader.py @@ -0,0 +1,130 @@ +"""MaxQuant Protein Group Reader.""" + +from typing import Literal, Optional, Union + +import pandas as pd + +from .keys import PGCols +from .pg_reader import PGReaderBase, pg_reader_provider + + +class MaxQuantPGReader(PGReaderBase): + r"""Reader for protein group matrices from the MaxQuant search engine. + + By default, the reader will read raw protein intensities from the protein group matrix. By passing + a suitable regular expression, it is also possible to extract LFQ + + Examples + -------- + Get example data + + .. code-block:: python + + import os + import tempfile + from alphabase.tools.data_downloader import DataShareDownloader + from alphabase.pg_reader import MaxQuantPGReader + + + # Download to temporary directory + URL = "https://datashare.biochem.mpg.de/s/KvToteOu0zzH17C" + download_dir = tempfile.mkdtemp() + + download_path = DataShareDownloader(url=URL, output_dir=download_dir).download() + + + Per default, the reader will return the raw intensities. Additional protein features are stored + in the dataframe index, samples are stored as columns. + + .. code-block:: python + + # Get raw intensities + reader = MaxQuantPGReader() + results = reader.import_file(download_path) + results.index.names + > FrozenList(['proteins', 'uniprot_ids', 'genes', 'is_decoy']) + results.columns + > Index([...], dtype='object', length=312) + + You can get other intensity types by passing a specific pattern to the `measurment_regex` parameter during class initialization. + To checkout all preconfigured regular expressions that enable you to retrieve different intensity modalities, + use the `get_preconfigured_regex` method: + + .. code-block:: python + + MaxQuantPGReader.get_preconfigured_regex() + > { + 'raw': '^Intensity(?!\\s[LHM]\\s).+$', + 'lfq': '^LFQ intensity(?!\\s[LHM]\\s).+$', + 'ibaq': '^iBAQ(?!\\s[LHM]\\s).+$' + } + + You can also pass a custom regular expression, e.g. to retrieve specific channels in TMT experiments + + .. code-block:: python + + # Match "Intensity H+ " + reader = MaxQuantPGReader(measurement_regex="^Intensity H .+") + + + References + ---------- + - MaxQuant Documentation (Cox Lab, 2024-06-27): https://cox-labs.github.io/coxdocs/output_tables.html#protein-groups, + (last viewed 2025-08) + + """ + + _reader_type = "maxquant" + + def __init__( + self, + *, + column_mapping: Optional[dict[str, str]] = None, + measurement_regex: Union[str, Literal["raw", "lfq", "ibaq"], None] = "raw", # noqa: PYI051 raw and lfq are special cases and not equivalent to string + ): + """Initialize MaxQuant protein group matrix reader. + + Parameters + ---------- + column_mapping + Dictionary mapping alphabase column names (keys) to MaxQuant column names (values). + If `None`, uses default mapping from configuration file. + measurement_regex + Pattern to select quantity columns + + - "raw" (default): Raw intensities + - "lfq": LFQ-corrected intensities + - "ibaq": Intensity-Based Absolute Quantification-corrected intensities + - custom: Any valid regular expression + + See class documentation for usage examples and `get_preconfigured_regex()` for available patterns. + + """ + super().__init__( + column_mapping=column_mapping, measurement_regex=measurement_regex + ) + + def _post_process(self, df: pd.DataFrame) -> pd.DataFrame: + """Process MaxQuant protein group table after standardization. + + Convert MaxQuant-specific decoy indicator (+) to standardized boolean series. + + Notes + ----- + MaxQuant marks peptides/proteins that were found to be part of a protein derived from the reversed part of the decoy database + with +. These should be removed for further data analysis. + + References + ---------- + https://cox-labs.github.io/coxdocs/output_tables.html#protein-groups (Status: 2025-08) + + """ + # Convert `+` indicator to boolean + if PGCols.DECOY_INDICATOR in df.columns: + df[PGCols.DECOY_INDICATOR] = df[PGCols.DECOY_INDICATOR].apply( + lambda x: x == "+" + ) + return df + + +pg_reader_provider.register_reader("maxquant", reader_class=MaxQuantPGReader) diff --git a/alphabase/pg_reader/mztab_pg_reader.py b/alphabase/pg_reader/mztab_pg_reader.py new file mode 100644 index 00000000..3219c25d --- /dev/null +++ b/alphabase/pg_reader/mztab_pg_reader.py @@ -0,0 +1,116 @@ +"""FragPipe protein group reader.""" + +from pathlib import Path +from typing import Literal, Optional, Union + +import pandas as pd + +from .pg_reader import PGReaderBase, pg_reader_provider + + +class MZTabPGReader(PGReaderBase): + """Reader for MZTab search engine output. + + MZTab is a standardized tab-delimited format for reporting proteomics and metabolomics results. + The format organizes data into distinct sections: metadata (MTD), protein groups (PRH/PRT), + peptides (PEH/PEP), PSMs (PSH/PSM), and small molecules (SMH/SML), with each section identified + by specific three-letter prefixes. This reader extracts protein-level quantification data from + the PRT lines, which contain protein abundances across samples or study variables. + + Example: + ------- + Per default, the reader will return the raw intensities from the `razor` method. Additional protein features are stored + in the dataframe index, samples are stored as columns. + + .. code-block:: python + + from alphabase.pg_reader import MZTabPGReader + + # Get raw intensities + reader = MZTabPGReader() + results = reader.import_file(path) + + + References: + ---------- + - Griss, J. et al. The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience*. Molecular & Cellular Proteomics 13, 2765-2775 (2014). + - Official MZTab Repository: https://github.com/HUPO-PSI/mzTab.git + - Official documentation: https://hupo-psi.github.io/mzTab/ + + """ + + _reader_type: str = "mztab" + + _PROTEIN_ROW_INDICATOR: str = "PRT" + _PROTEIN_HEADER_INDICATOR: str = "PRH" + _SEPARATOR: str = "\t" + + def __init__( # noqa: D107 inherited from base class + self, + *, + column_mapping: Optional[dict[str, str]] = None, + measurement_regex: Union[ + str, Literal["assay", "study_variable"], None # noqa: PYI051 raw and lfq are special cases and not equivalent to string + ] = "assay", + ): + super().__init__( + column_mapping=column_mapping, measurement_regex=measurement_regex + ) + + def _load_file(self, file_path: str) -> pd.DataFrame: + """Load MZTab file and extract protein data section. + + Parameters + ---------- + file_path : str + Path to MZTab file + + Returns + ------- + pd.DataFrame + DataFrame containing protein data from MZTab file + + Notes + ----- + Protein lines are indicated with a leading `PRT`. The protein metadata header is + indicated with a leading `PRH`. The file is tab separated. + + Raises + ------ + ValueError + If no protein data or metadata is found in the file + + """ + file_path = Path(file_path) + protein_header = None + protein_rows = [] + + with file_path.open() as f: + for line in f: + line_stripped = line.strip() + + if line_stripped.startswith(self._PROTEIN_HEADER_INDICATOR): + # Protein header line - remove 'PRH' prefix and parse columns + header_content = line_stripped[3:].strip() + protein_header = header_content.split(self._SEPARATOR) + + elif line_stripped.startswith(self._PROTEIN_ROW_INDICATOR): + # Protein data line - remove 'PRT' prefix and parse data + row_content = line_stripped[3:].strip() + protein_rows.append(row_content.split(self._SEPARATOR)) + + # Validate that we found protein data + if protein_header is None: + raise ValueError( + f"No protein header ({self._PROTEIN_HEADER_INDICATOR}) found in MZTab file" + ) + + if not protein_rows: + raise ValueError( + f"No protein data rows ({self._PROTEIN_ROW_INDICATOR}) found in MZTab file" + ) + + return pd.DataFrame(protein_rows, columns=protein_header) + + +pg_reader_provider.register_reader("mztab", reader_class=MZTabPGReader) diff --git a/alphabase/pg_reader/pg_reader.py b/alphabase/pg_reader/pg_reader.py index dc814268..a09eb1f5 100644 --- a/alphabase/pg_reader/pg_reader.py +++ b/alphabase/pg_reader/pg_reader.py @@ -142,6 +142,8 @@ def import_file(self, file_path: str) -> pd.DataFrame: extra_columns=feature_columns, ) + df = self._post_process(df) + # Keep dataframe index as default if no features are specified in column mapping return df.set_index(feature_columns) if len(feature_columns) > 0 else df @@ -166,18 +168,20 @@ def _load_file(self, file_path: str) -> pd.DataFrame: """ if Path(file_path).suffix == ".hdf": return pd.read_hdf(file_path) + if Path(file_path).suffix == ".parquet": + return pd.read_parquet(file_path) sep = _get_delimiter(file_path) return pd.read_csv(file_path, sep=sep, keep_default_na=False) def _pre_process(self, df: pd.DataFrame) -> pd.DataFrame: - """Preprocess dataframe before standardizing columns and return an updated copy.""" + """Preprocess dataframe before standardizing columns.""" return df def _translate_columns( self, df: pd.DataFrame, column_mapping: dict[str, str] ) -> pd.DataFrame: - """Translate standardized columns in dataframe from other search engines to AlphaBase format and return an updated copy.""" + """Translate standardized columns in dataframe from other search engines to AlphaBase format.""" return df.rename(columns=column_mapping) def _filter_measurement( @@ -186,7 +190,7 @@ def _filter_measurement( regex: str, extra_columns: Optional[Iterable[str]] = None, ) -> pd.DataFrame: - """Subset :class:`pd.DataFrame` to columns matching a regex plus optionally extra columns and return an updated copy. + """Subset :class:`pd.DataFrame` to columns matching a regex plus optionally extra columns. Parameters ---------- @@ -214,10 +218,14 @@ def _filter_measurement( return df[regex_columns + extra_columns] + def _post_process(self, df: pd.DataFrame) -> pd.DataFrame: + """Process dataframe after standardizing columns.""" + return df + def _get_measurement_regex(self, regex: Optional[str]) -> Union[str, None]: """Get the correct named measurement regex from the reader configuration. - The function tries to match the provided `regex` to the keys in `measurement_regex`. This + The function tries to match the provided `regex` to the keys in `measurement_regex` in the reader configuration. This enables users to provide tangible names for the columns they want instead of abstract regular expressions. If a match is found, it returns the associated value (the actual regex). If this not possible, the function assumes that a regular expression was passed and diff --git a/alphabase/pg_reader/spectronaut_reader.py b/alphabase/pg_reader/spectronaut_reader.py new file mode 100644 index 00000000..bdee9088 --- /dev/null +++ b/alphabase/pg_reader/spectronaut_reader.py @@ -0,0 +1,108 @@ +"""Spectronaut Protein Group Reader.""" + +import re +from typing import Any, Literal, Optional, Union + +import numpy as np +import pandas as pd + +from .pg_reader import PGReaderBase, pg_reader_provider + + +class SpectronautPGReader(PGReaderBase): + """Reader for pivot reports from the Spectronaut search engine. + + Examples + -------- + Get example data + + .. code-block:: python + + import os + import tempfile + from alphabase.tools.data_downloader import DataShareDownloader + from alphabase.pg_reader import SpectronautPGReader + + + # Download to temporary directory + # Data provided by Pham et al, 2024 (https://doi.org/10.1093/bioinformatics/btae432), + # originally generated by Bekker-Jensen et al, 2020 (https://doi.org/10.1038/s41467-020-14609-1) + URL = "https://datashare.biochem.mpg.de/s/ot008eF6wwSISvk" + download_dir = tempfile.mkdtemp() + + download_path = DataShareDownloader(url=URL, output_dir=download_dir).download() + + + The reader will return the values that are stored in the spectronaut report. Note that the nature of + these values depends on the selection made by the user during the data export in Spectronaut and might + represent Protein Quantities or Peptide Quantities. + + .. code-block:: python + + reader = SpectronautPGReader() + results = reader.import_file(download_path) + results.index.names + > FrozenList(['proteins', 'genes']) + + Spectronaut allows users to export a multitude of feature-level metadata. You can retrieve additional + columns from the report by using the `add_column_mapping` method + + .. code-block:: python + + reader = SpectronautPGReader() + reader.add_column_mapping({"organism": "PG.Organisms"}) + results = reader.import_file(spectronaut_path) + results.index.names + > FrozenList(['proteins', 'genes', 'organism']) + + """ + + _reader_type: str = "spectronaut" + + _to_nan_values: tuple[Any] = ("Filtered",) + + def __init__( + self, + *, + column_mapping: Optional[dict[str, str]] = None, + measurement_regex: Union[str, Literal["default"], None] = "default", # noqa: PYI051 default are special cases and not equivalent to string + ): + """Initialize Spectronaut protein group matrix reader. + + Parameters + ---------- + column_mapping + Dictionary mapping alphabase column names (keys) to Spectronaut column names (values). + If `None`, uses default mapping from configuration file. + measurement_regex + Pattern to select quantity columns + + - "default" (default): Intensities exported by the user in the spectronaut report. Might depend on the specific report. + - custom: Any valid regular expression + + See class documentation for usage examples and `get_preconfigured_regex()` for available patterns. + + """ + super().__init__( + column_mapping=column_mapping, measurement_regex=measurement_regex + ) + + def _post_process(self, df: pd.DataFrame) -> pd.DataFrame: + """Process Spectronaut protein group table after standardization. + + Notes + ----- + Spectronaut reports might contain "Filtered" as values. Replace these values with NAN + and assure that floating point values are returned + + """ + # Only modify the intensity columns, as defined by the `measurement_regex` + pattern = re.compile(self.measurement_regex) + regex_columns = [col for col in df.columns if re.search(pattern, col)] + df[regex_columns] = df[regex_columns].replace(self._to_nan_values, np.nan) + df[regex_columns] = df[regex_columns].astype(float) + + return df + + +pg_reader_provider.register_reader("spectronaut", reader_class=SpectronautPGReader) diff --git a/docs/api.rst b/docs/api.rst index 7a4c8218..72a33557 100644 --- a/docs/api.rst +++ b/docs/api.rst @@ -36,6 +36,7 @@ Reader :maxdepth: 2 modules_psm_reader + modules_pg_reader I/O diff --git a/docs/modules_pg_reader.rst b/docs/modules_pg_reader.rst new file mode 100644 index 00000000..cc27886d --- /dev/null +++ b/docs/modules_pg_reader.rst @@ -0,0 +1,17 @@ +alphabase.pg_reader +=========================== + +All pg_readers can be accessed by +:obj:`pg_reader_provider `. + +.. toctree:: + :maxdepth: 1 + + pg_reader/pg_base + pg_reader/alphadia_pg_reader + pg_reader/alphapept_pg_reader + pg_reader/diann_pg_reader + pg_reader/fragpipe_pg_reader + pg_reader/maxquant_pg_reader + pg_reader/mztab_pg_reader + pg_reader/spectronaut_pg_reader diff --git a/docs/pg_reader/alphadia_pg_reader.rst b/docs/pg_reader/alphadia_pg_reader.rst new file mode 100644 index 00000000..c4c79426 --- /dev/null +++ b/docs/pg_reader/alphadia_pg_reader.rst @@ -0,0 +1,7 @@ +alphabase.pg_reader.alphadia_pg_reader +====================================== + +.. automodule:: alphabase.pg_reader.alphadia_pg_reader + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/pg_reader/alphapept_pg_reader.rst b/docs/pg_reader/alphapept_pg_reader.rst new file mode 100644 index 00000000..e1d08593 --- /dev/null +++ b/docs/pg_reader/alphapept_pg_reader.rst @@ -0,0 +1,7 @@ +alphabase.pg_reader.alphapept_pg_reader +======================================= + +.. automodule:: alphabase.pg_reader.alphapept_pg_reader + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/pg_reader/diann_pg_reader.rst b/docs/pg_reader/diann_pg_reader.rst new file mode 100644 index 00000000..15a7d0e8 --- /dev/null +++ b/docs/pg_reader/diann_pg_reader.rst @@ -0,0 +1,7 @@ +alphabase.pg_reader.diann_pg_reader +=================================== + +.. automodule:: alphabase.pg_reader.diann_pg_reader + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/pg_reader/fragpipe_pg_reader.rst b/docs/pg_reader/fragpipe_pg_reader.rst new file mode 100644 index 00000000..fff83518 --- /dev/null +++ b/docs/pg_reader/fragpipe_pg_reader.rst @@ -0,0 +1,7 @@ +alphabase.pg_reader.fragpipe_pg_reader +====================================== + +.. automodule:: alphabase.pg_reader.fragpipe_pg_reader + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/pg_reader/maxquant_pg_reader.rst b/docs/pg_reader/maxquant_pg_reader.rst new file mode 100644 index 00000000..5744f171 --- /dev/null +++ b/docs/pg_reader/maxquant_pg_reader.rst @@ -0,0 +1,7 @@ +alphabase.pg_reader.maxquant_pg_reader +====================================== + +.. automodule:: alphabase.pg_reader.maxquant_pg_reader + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/pg_reader/mztab_pg_reader.rst b/docs/pg_reader/mztab_pg_reader.rst new file mode 100644 index 00000000..69475764 --- /dev/null +++ b/docs/pg_reader/mztab_pg_reader.rst @@ -0,0 +1,7 @@ +alphabase.pg_reader.mztab_pg_reader +====================================== + +.. automodule:: alphabase.pg_reader.mztab_pg_reader + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/pg_reader/pg_base.rst b/docs/pg_reader/pg_base.rst new file mode 100644 index 00000000..a18e1710 --- /dev/null +++ b/docs/pg_reader/pg_base.rst @@ -0,0 +1,7 @@ +alphabase.pg_reader.base +======================== + +.. automodule:: alphabase.pg_reader.pg_reader + :members: + :undoc-members: + :show-inheritance: diff --git a/docs/pg_reader/spectronaut_pg_reader.rst b/docs/pg_reader/spectronaut_pg_reader.rst new file mode 100644 index 00000000..5bc39fca --- /dev/null +++ b/docs/pg_reader/spectronaut_pg_reader.rst @@ -0,0 +1,7 @@ +alphabase.pg_reader.spectronaut_reader +====================================== + +.. automodule:: alphabase.pg_reader.spectronaut_reader + :members: + :undoc-members: + :show-inheritance: diff --git a/tests/integration/conftest.py b/tests/integration/conftest.py index b8e7a26d..ce29948e 100644 --- a/tests/integration/conftest.py +++ b/tests/integration/conftest.py @@ -139,3 +139,111 @@ def example_alphapept_hdf(tmp_path) -> tuple[Path, pd.DataFrame]: REF_URL = "https://datashare.biochem.mpg.de/s/gVhEy0mjrEE9F5f" return get_remote_data_with_ref(url=URL, ref_url=REF_URL, directory=tmp_path) + + +@pytest.fixture(scope="function") +def example_maxquant_tsv(tmp_path) -> tuple[Path, pd.DataFrame]: + """Get and parse real alphapept protein group report matrix.""" + TEST_FILE_NAME = "pg_maxquant.2024.tsv" + TEST_DATA = """Protein IDs Majority protein IDs Peptide counts (all) Peptide counts (razor+unique) Peptide counts (unique) Protein names Gene names Fasta headers Number of proteins Peptides Razor + unique peptides Unique peptides Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc1 (2) Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc10 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc11 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc14 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc15 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc16 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc17 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc18 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc19 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc2 (2) Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc20 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc21 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc22 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc23 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc24 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc3 (2) Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc4 (2) Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc5 (2) Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc6 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc8 Peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc9 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac1 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac10 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac11 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac12 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac13 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac14 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac15 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac16 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac17 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac18 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac19 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac2 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac20 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac21 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac22 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac23 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac24 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac3 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac4 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac5 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac6 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac7 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac8 Peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac9 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc1 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc10 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc11 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc12 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc13 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc14 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc15 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc16 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc17 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc18 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc19 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc2 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc20 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc21 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc22 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc23 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc24 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc3 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc4 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc5 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc6 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc7 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc8 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc9 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc12 Peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc13 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc1 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc10 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc11 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc12 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc13 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc14 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc15 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc16 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc17 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc18 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc19 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc2 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc20 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc21 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc22 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc23 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc24 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc3 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc4 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc5 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc6 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc7 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc8 Peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc9 Peptides 20161017_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc7 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F1 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F10_170503153643 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F11 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F12 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F13 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F14 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F15 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F16 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F17 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F18 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F19 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F2 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F20 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F21 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F22 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F23 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F24 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F3 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F4 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F5 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F6 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F7 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F8 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F9 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F1_170427224508 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F10 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F11 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F12 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F13 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F14 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F15 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F16 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F17 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F18 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F19 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F2_170427235251 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F20 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F21 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F22 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F23 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F24 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F3_170428010030 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F4_170428020817 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F5 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F6 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F7 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F8 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F9 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F1 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F10 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F11 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F12 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F13 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F14 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F15 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F16 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F17 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F18 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F19 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F2 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F20 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F21 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F22 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F23 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F24 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F3 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F4 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F5 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F6 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F7 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F8 Peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F9 Peptides Liver_Rep1_31_C6 Peptides Liver_Rep1_32_C7 Peptides Liver_Rep1_33_C8 Peptides Liver_Rep1_34_C9 Peptides Liver_Rep1_35_C10 Peptides Liver_Rep1_36_C11 Peptides Liver_Rep1_37_C12 Peptides Liver_Rep1_38_D1 Peptides Liver_Rep1_39_D2 Peptides Liver_Rep1_40_D3 Peptides Liver_Rep1_41_D4 Peptides Liver_Rep1_42_D5 Peptides Liver_Rep1_43_D6 Peptides Liver_Rep1_44_D7 Peptides Liver_Rep1_45_D8 Peptides Liver_Rep1_46_D9 Peptides Liver_Rep1_47_D10 Peptides Liver_Rep1_48_D11 Peptides Liver_Rep1_49_D12 Peptides Liver_Rep1_50_E1 Peptides Liver_Rep1_51_E2 Peptides Liver_Rep1_52_E3 Peptides Liver_Rep1_53_E4 Peptides Liver_Rep1_54_E5 Peptides Liver_Rep1_55_E6 Peptides Liver_Rep1_56_E7 Peptides Liver_Rep1_57_E8 Peptides Liver_Rep1_58_E9 Peptides Liver_Rep1_59_E10 Peptides Liver_Rep1_60_E11 Peptides Liver_Rep1_61_E12 Peptides Liver_Rep1_62_F1 Peptides Liver_Rep1_63_F2 Peptides Liver_Rep1_64_F3 Peptides Liver_Rep1_65_F4 Peptides Liver_Rep1_66_F5 Peptides Liver_Rep1_67_F6 Peptides Liver_Rep1_68_F7 Peptides Liver_Rep1_69_F8 Peptides Liver_Rep1_70_F9 Peptides Liver_Rep1_71_F10 Peptides Liver_Rep1_72_F11 Peptides Liver_Rep1_73_F12 Peptides Liver_Rep1_74_G1 Peptides Liver_Rep1_75_G2 Peptides Liver_Rep1_76_G3 Peptides Liver_Rep1_77_G4 Peptides Liver_Rep1_78_G5 Peptides Liver_Rep2_31_C6 Peptides Liver_Rep2_32_C7 Peptides Liver_Rep2_33_C8 Peptides Liver_Rep2_34_C9 Peptides Liver_Rep2_35_C10 Peptides Liver_Rep2_36_C11 Peptides Liver_Rep2_37_C12 Peptides Liver_Rep2_38_D1 Peptides Liver_Rep2_39_D2 Peptides Liver_Rep2_40_D3 Peptides Liver_Rep2_41_D4 Peptides Liver_Rep2_42_D5 Peptides Liver_Rep2_43_D6 Peptides Liver_Rep2_44_D7 Peptides Liver_Rep2_45_D8 Peptides Liver_Rep2_46_D9 Peptides Liver_Rep2_47_D10 Peptides Liver_Rep2_48_D11 Peptides Liver_Rep2_49_D12 Peptides Liver_Rep2_50_E1 Peptides Liver_Rep2_51_E2 Peptides Liver_Rep2_52_E3 Peptides Liver_Rep2_53_E4 Peptides Liver_Rep2_54_E5 Peptides Liver_Rep2_55_E6 Peptides Liver_Rep2_56_E7 Peptides Liver_Rep2_57_E8 Peptides Liver_Rep2_58_E9 Peptides Liver_Rep2_59_E10 Peptides Liver_Rep2_60_E11 Peptides Liver_Rep2_61_E12 Peptides Liver_Rep2_62_F1 Peptides Liver_Rep2_63_F2 Peptides Liver_Rep2_64_F3 Peptides Liver_Rep2_65_F4 Peptides Liver_Rep2_66_F5 Peptides Liver_Rep2_67_F6 Peptides Liver_Rep2_68_F7 Peptides Liver_Rep2_69_F8 Peptides Liver_Rep2_70_F9 Peptides Liver_Rep2_71_F10 Peptides Liver_Rep2_72_F11 Peptides Liver_Rep2_73_F12 Peptides Liver_Rep2_74_G1 Peptides Liver_Rep2_75_G2 Peptides Liver_Rep2_76_G3 Peptides Liver_Rep2_77_G4 Peptides Liver_Rep2_78_G5 Peptides Liver_Rep3_31_C6 Peptides Liver_Rep3_32_C7 Peptides Liver_Rep3_33_C8 Peptides Liver_Rep3_34_C9 Peptides Liver_Rep3_35_C10 Peptides Liver_Rep3_36_C11 Peptides Liver_Rep3_37_C12 Peptides Liver_Rep3_38_D1 Peptides Liver_Rep3_39_D2 Peptides Liver_Rep3_40_D3 Peptides Liver_Rep3_41_D4 Peptides Liver_Rep3_42_D5 Peptides Liver_Rep3_43_D6 Peptides Liver_Rep3_44_D7 Peptides Liver_Rep3_45_D8 Peptides Liver_Rep3_46_D9 Peptides Liver_Rep3_47_D10 Peptides Liver_Rep3_48_D11 Peptides Liver_Rep3_49_D12 Peptides Liver_Rep3_50_E1 Peptides Liver_Rep3_51_E2 Peptides Liver_Rep3_52_E3 Peptides Liver_Rep3_53_E4 Peptides Liver_Rep3_54_E5 Peptides Liver_Rep3_55_E6 Peptides Liver_Rep3_56_E7 Peptides Liver_Rep3_57_E8 Peptides Liver_Rep3_58_E9 Peptides Liver_Rep3_59_E10 Peptides Liver_Rep3_60_E11 Peptides Liver_Rep3_61_E12 Peptides Liver_Rep3_62_F1 Peptides Liver_Rep3_63_F2 Peptides Liver_Rep3_64_F3 Peptides Liver_Rep3_65_F4 Peptides Liver_Rep3_66_F5 Peptides Liver_Rep3_67_F6 Peptides Liver_Rep3_68_F7 Peptides Liver_Rep3_69_F8 Peptides Liver_Rep3_70_F9 Peptides Liver_Rep3_71_F10 Peptides Liver_Rep3_72_F11 Peptides Liver_Rep3_73_F12 Peptides Liver_Rep3_74_G1 Peptides Liver_Rep3_75_G2 Peptides Liver_Rep3_76_G3 Peptides Liver_Rep3_77_G4 Peptides Liver_Rep3_78_G5 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc1 (2) Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc10 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc11 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc14 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc15 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc16 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc17 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc18 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc19 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc2 (2) Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc20 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc21 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc22 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc23 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc24 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc3 (2) Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc4 (2) Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc5 (2) Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc6 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc8 Razor + unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc9 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac1 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac10 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac11 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac12 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac13 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac14 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac15 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac16 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac17 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac18 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac19 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac2 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac20 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac21 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac22 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac23 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac24 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac3 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac4 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac5 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac6 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac7 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac8 Razor + unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac9 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc1 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc10 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc11 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc12 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc13 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc14 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc15 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc16 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc17 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc18 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc19 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc2 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc20 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc21 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc22 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc23 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc24 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc3 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc4 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc5 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc6 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc7 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc8 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc9 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc12 Razor + unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc13 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc1 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc10 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc11 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc12 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc13 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc14 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc15 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc16 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc17 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc18 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc19 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc2 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc20 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc21 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc22 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc23 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc24 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc3 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc4 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc5 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc6 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc7 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc8 Razor + unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc9 Razor + unique peptides 20161017_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc7 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F1 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F10_170503153643 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F11 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F12 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F13 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F14 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F15 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F16 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F17 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F18 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F19 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F2 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F20 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F21 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F22 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F23 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F24 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F3 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F4 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F5 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F6 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F7 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F8 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F9 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F1_170427224508 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F10 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F11 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F12 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F13 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F14 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F15 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F16 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F17 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F18 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F19 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F2_170427235251 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F20 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F21 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F22 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F23 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F24 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F3_170428010030 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F4_170428020817 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F5 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F6 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F7 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F8 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F9 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F1 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F10 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F11 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F12 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F13 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F14 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F15 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F16 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F17 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F18 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F19 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F2 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F20 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F21 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F22 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F23 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F24 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F3 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F4 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F5 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F6 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F7 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F8 Razor + unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F9 Razor + unique peptides Liver_Rep1_31_C6 Razor + unique peptides Liver_Rep1_32_C7 Razor + unique peptides Liver_Rep1_33_C8 Razor + unique peptides Liver_Rep1_34_C9 Razor + unique peptides Liver_Rep1_35_C10 Razor + unique peptides Liver_Rep1_36_C11 Razor + unique peptides Liver_Rep1_37_C12 Razor + unique peptides Liver_Rep1_38_D1 Razor + unique peptides Liver_Rep1_39_D2 Razor + unique peptides Liver_Rep1_40_D3 Razor + unique peptides Liver_Rep1_41_D4 Razor + unique peptides Liver_Rep1_42_D5 Razor + unique peptides Liver_Rep1_43_D6 Razor + unique peptides Liver_Rep1_44_D7 Razor + unique peptides Liver_Rep1_45_D8 Razor + unique peptides Liver_Rep1_46_D9 Razor + unique peptides Liver_Rep1_47_D10 Razor + unique peptides Liver_Rep1_48_D11 Razor + unique peptides Liver_Rep1_49_D12 Razor + unique peptides Liver_Rep1_50_E1 Razor + unique peptides Liver_Rep1_51_E2 Razor + unique peptides Liver_Rep1_52_E3 Razor + unique peptides Liver_Rep1_53_E4 Razor + unique peptides Liver_Rep1_54_E5 Razor + unique peptides Liver_Rep1_55_E6 Razor + unique peptides Liver_Rep1_56_E7 Razor + unique peptides Liver_Rep1_57_E8 Razor + unique peptides Liver_Rep1_58_E9 Razor + unique peptides Liver_Rep1_59_E10 Razor + unique peptides Liver_Rep1_60_E11 Razor + unique peptides Liver_Rep1_61_E12 Razor + unique peptides Liver_Rep1_62_F1 Razor + unique peptides Liver_Rep1_63_F2 Razor + unique peptides Liver_Rep1_64_F3 Razor + unique peptides Liver_Rep1_65_F4 Razor + unique peptides Liver_Rep1_66_F5 Razor + unique peptides Liver_Rep1_67_F6 Razor + unique peptides Liver_Rep1_68_F7 Razor + unique peptides Liver_Rep1_69_F8 Razor + unique peptides Liver_Rep1_70_F9 Razor + unique peptides Liver_Rep1_71_F10 Razor + unique peptides Liver_Rep1_72_F11 Razor + unique peptides Liver_Rep1_73_F12 Razor + unique peptides Liver_Rep1_74_G1 Razor + unique peptides Liver_Rep1_75_G2 Razor + unique peptides Liver_Rep1_76_G3 Razor + unique peptides Liver_Rep1_77_G4 Razor + unique peptides Liver_Rep1_78_G5 Razor + unique peptides Liver_Rep2_31_C6 Razor + unique peptides Liver_Rep2_32_C7 Razor + unique peptides Liver_Rep2_33_C8 Razor + unique peptides Liver_Rep2_34_C9 Razor + unique peptides Liver_Rep2_35_C10 Razor + unique peptides Liver_Rep2_36_C11 Razor + unique peptides Liver_Rep2_37_C12 Razor + unique peptides Liver_Rep2_38_D1 Razor + unique peptides Liver_Rep2_39_D2 Razor + unique peptides Liver_Rep2_40_D3 Razor + unique peptides Liver_Rep2_41_D4 Razor + unique peptides Liver_Rep2_42_D5 Razor + unique peptides Liver_Rep2_43_D6 Razor + unique peptides Liver_Rep2_44_D7 Razor + unique peptides Liver_Rep2_45_D8 Razor + unique peptides Liver_Rep2_46_D9 Razor + unique peptides Liver_Rep2_47_D10 Razor + unique peptides Liver_Rep2_48_D11 Razor + unique peptides Liver_Rep2_49_D12 Razor + unique peptides Liver_Rep2_50_E1 Razor + unique peptides Liver_Rep2_51_E2 Razor + unique peptides Liver_Rep2_52_E3 Razor + unique peptides Liver_Rep2_53_E4 Razor + unique peptides Liver_Rep2_54_E5 Razor + unique peptides Liver_Rep2_55_E6 Razor + unique peptides Liver_Rep2_56_E7 Razor + unique peptides Liver_Rep2_57_E8 Razor + unique peptides Liver_Rep2_58_E9 Razor + unique peptides Liver_Rep2_59_E10 Razor + unique peptides Liver_Rep2_60_E11 Razor + unique peptides Liver_Rep2_61_E12 Razor + unique peptides Liver_Rep2_62_F1 Razor + unique peptides Liver_Rep2_63_F2 Razor + unique peptides Liver_Rep2_64_F3 Razor + unique peptides Liver_Rep2_65_F4 Razor + unique peptides Liver_Rep2_66_F5 Razor + unique peptides Liver_Rep2_67_F6 Razor + unique peptides Liver_Rep2_68_F7 Razor + unique peptides Liver_Rep2_69_F8 Razor + unique peptides Liver_Rep2_70_F9 Razor + unique peptides Liver_Rep2_71_F10 Razor + unique peptides Liver_Rep2_72_F11 Razor + unique peptides Liver_Rep2_73_F12 Razor + unique peptides Liver_Rep2_74_G1 Razor + unique peptides Liver_Rep2_75_G2 Razor + unique peptides Liver_Rep2_76_G3 Razor + unique peptides Liver_Rep2_77_G4 Razor + unique peptides Liver_Rep2_78_G5 Razor + unique peptides Liver_Rep3_31_C6 Razor + unique peptides Liver_Rep3_32_C7 Razor + unique peptides Liver_Rep3_33_C8 Razor + unique peptides Liver_Rep3_34_C9 Razor + unique peptides Liver_Rep3_35_C10 Razor + unique peptides Liver_Rep3_36_C11 Razor + unique peptides Liver_Rep3_37_C12 Razor + unique peptides Liver_Rep3_38_D1 Razor + unique peptides Liver_Rep3_39_D2 Razor + unique peptides Liver_Rep3_40_D3 Razor + unique peptides Liver_Rep3_41_D4 Razor + unique peptides Liver_Rep3_42_D5 Razor + unique peptides Liver_Rep3_43_D6 Razor + unique peptides Liver_Rep3_44_D7 Razor + unique peptides Liver_Rep3_45_D8 Razor + unique peptides Liver_Rep3_46_D9 Razor + unique peptides Liver_Rep3_47_D10 Razor + unique peptides Liver_Rep3_48_D11 Razor + unique peptides Liver_Rep3_49_D12 Razor + unique peptides Liver_Rep3_50_E1 Razor + unique peptides Liver_Rep3_51_E2 Razor + unique peptides Liver_Rep3_52_E3 Razor + unique peptides Liver_Rep3_53_E4 Razor + unique peptides Liver_Rep3_54_E5 Razor + unique peptides Liver_Rep3_55_E6 Razor + unique peptides Liver_Rep3_56_E7 Razor + unique peptides Liver_Rep3_57_E8 Razor + unique peptides Liver_Rep3_58_E9 Razor + unique peptides Liver_Rep3_59_E10 Razor + unique peptides Liver_Rep3_60_E11 Razor + unique peptides Liver_Rep3_61_E12 Razor + unique peptides Liver_Rep3_62_F1 Razor + unique peptides Liver_Rep3_63_F2 Razor + unique peptides Liver_Rep3_64_F3 Razor + unique peptides Liver_Rep3_65_F4 Razor + unique peptides Liver_Rep3_66_F5 Razor + unique peptides Liver_Rep3_67_F6 Razor + unique peptides Liver_Rep3_68_F7 Razor + unique peptides Liver_Rep3_69_F8 Razor + unique peptides Liver_Rep3_70_F9 Razor + unique peptides Liver_Rep3_71_F10 Razor + unique peptides Liver_Rep3_72_F11 Razor + unique peptides Liver_Rep3_73_F12 Razor + unique peptides Liver_Rep3_74_G1 Razor + unique peptides Liver_Rep3_75_G2 Razor + unique peptides Liver_Rep3_76_G3 Razor + unique peptides Liver_Rep3_77_G4 Razor + unique peptides Liver_Rep3_78_G5 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc1 (2) Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc10 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc11 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc14 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc15 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc16 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc17 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc18 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc19 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc2 (2) Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc20 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc21 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc22 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc23 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc24 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc3 (2) Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc4 (2) Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc5 (2) Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc6 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc8 Unique peptides 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc9 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac1 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac10 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac11 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac12 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac13 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac14 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac15 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac16 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac17 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac18 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac19 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac2 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac20 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac21 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac22 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac23 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac24 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac3 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac4 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac5 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac6 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac7 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac8 Unique peptides 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac9 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc1 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc10 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc11 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc12 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc13 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc14 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc15 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc16 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc17 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc18 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc19 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc2 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc20 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc21 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc22 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc23 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc24 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc3 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc4 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc5 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc6 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc7 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc8 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc9 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc12 Unique peptides 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc13 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc1 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc10 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc11 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc12 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc13 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc14 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc15 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc16 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc17 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc18 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc19 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc2 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc20 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc21 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc22 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc23 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc24 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc3 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc4 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc5 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc6 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc7 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc8 Unique peptides 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc9 Unique peptides 20161017_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc7 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F1 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F10_170503153643 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F11 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F12 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F13 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F14 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F15 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F16 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F17 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F18 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F19 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F2 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F20 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F21 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F22 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F23 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F24 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F3 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F4 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F5 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F6 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F7 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F8 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F9 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F1_170427224508 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F10 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F11 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F12 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F13 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F14 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F15 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F16 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F17 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F18 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F19 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F2_170427235251 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F20 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F21 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F22 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F23 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F24 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F3_170428010030 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F4_170428020817 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F5 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F6 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F7 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F8 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F9 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F1 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F10 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F11 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F12 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F13 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F14 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F15 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F16 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F17 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F18 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F19 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F2 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F20 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F21 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F22 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F23 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F24 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F3 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F4 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F5 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F6 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F7 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F8 Unique peptides 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F9 Unique peptides Liver_Rep1_31_C6 Unique peptides Liver_Rep1_32_C7 Unique peptides Liver_Rep1_33_C8 Unique peptides Liver_Rep1_34_C9 Unique peptides Liver_Rep1_35_C10 Unique peptides Liver_Rep1_36_C11 Unique peptides Liver_Rep1_37_C12 Unique peptides Liver_Rep1_38_D1 Unique peptides Liver_Rep1_39_D2 Unique peptides Liver_Rep1_40_D3 Unique peptides Liver_Rep1_41_D4 Unique peptides Liver_Rep1_42_D5 Unique peptides Liver_Rep1_43_D6 Unique peptides Liver_Rep1_44_D7 Unique peptides Liver_Rep1_45_D8 Unique peptides Liver_Rep1_46_D9 Unique peptides Liver_Rep1_47_D10 Unique peptides Liver_Rep1_48_D11 Unique peptides Liver_Rep1_49_D12 Unique peptides Liver_Rep1_50_E1 Unique peptides Liver_Rep1_51_E2 Unique peptides Liver_Rep1_52_E3 Unique peptides Liver_Rep1_53_E4 Unique peptides Liver_Rep1_54_E5 Unique peptides Liver_Rep1_55_E6 Unique peptides Liver_Rep1_56_E7 Unique peptides Liver_Rep1_57_E8 Unique peptides Liver_Rep1_58_E9 Unique peptides Liver_Rep1_59_E10 Unique peptides Liver_Rep1_60_E11 Unique peptides Liver_Rep1_61_E12 Unique peptides Liver_Rep1_62_F1 Unique peptides Liver_Rep1_63_F2 Unique peptides Liver_Rep1_64_F3 Unique peptides Liver_Rep1_65_F4 Unique peptides Liver_Rep1_66_F5 Unique peptides Liver_Rep1_67_F6 Unique peptides Liver_Rep1_68_F7 Unique peptides Liver_Rep1_69_F8 Unique peptides Liver_Rep1_70_F9 Unique peptides Liver_Rep1_71_F10 Unique peptides Liver_Rep1_72_F11 Unique peptides Liver_Rep1_73_F12 Unique peptides Liver_Rep1_74_G1 Unique peptides Liver_Rep1_75_G2 Unique peptides Liver_Rep1_76_G3 Unique peptides Liver_Rep1_77_G4 Unique peptides Liver_Rep1_78_G5 Unique peptides Liver_Rep2_31_C6 Unique peptides Liver_Rep2_32_C7 Unique peptides Liver_Rep2_33_C8 Unique peptides Liver_Rep2_34_C9 Unique peptides Liver_Rep2_35_C10 Unique peptides Liver_Rep2_36_C11 Unique peptides Liver_Rep2_37_C12 Unique peptides Liver_Rep2_38_D1 Unique peptides Liver_Rep2_39_D2 Unique peptides Liver_Rep2_40_D3 Unique peptides Liver_Rep2_41_D4 Unique peptides Liver_Rep2_42_D5 Unique peptides Liver_Rep2_43_D6 Unique peptides Liver_Rep2_44_D7 Unique peptides Liver_Rep2_45_D8 Unique peptides Liver_Rep2_46_D9 Unique peptides Liver_Rep2_47_D10 Unique peptides Liver_Rep2_48_D11 Unique peptides Liver_Rep2_49_D12 Unique peptides Liver_Rep2_50_E1 Unique peptides Liver_Rep2_51_E2 Unique peptides Liver_Rep2_52_E3 Unique peptides Liver_Rep2_53_E4 Unique peptides Liver_Rep2_54_E5 Unique peptides Liver_Rep2_55_E6 Unique peptides Liver_Rep2_56_E7 Unique peptides Liver_Rep2_57_E8 Unique peptides Liver_Rep2_58_E9 Unique peptides Liver_Rep2_59_E10 Unique peptides Liver_Rep2_60_E11 Unique peptides Liver_Rep2_61_E12 Unique peptides Liver_Rep2_62_F1 Unique peptides Liver_Rep2_63_F2 Unique peptides Liver_Rep2_64_F3 Unique peptides Liver_Rep2_65_F4 Unique peptides Liver_Rep2_66_F5 Unique peptides Liver_Rep2_67_F6 Unique peptides Liver_Rep2_68_F7 Unique peptides Liver_Rep2_69_F8 Unique peptides Liver_Rep2_70_F9 Unique peptides Liver_Rep2_71_F10 Unique peptides Liver_Rep2_72_F11 Unique peptides Liver_Rep2_73_F12 Unique peptides Liver_Rep2_74_G1 Unique peptides Liver_Rep2_75_G2 Unique peptides Liver_Rep2_76_G3 Unique peptides Liver_Rep2_77_G4 Unique peptides Liver_Rep2_78_G5 Unique peptides Liver_Rep3_31_C6 Unique peptides Liver_Rep3_32_C7 Unique peptides Liver_Rep3_33_C8 Unique peptides Liver_Rep3_34_C9 Unique peptides Liver_Rep3_35_C10 Unique peptides Liver_Rep3_36_C11 Unique peptides Liver_Rep3_37_C12 Unique peptides Liver_Rep3_38_D1 Unique peptides Liver_Rep3_39_D2 Unique peptides Liver_Rep3_40_D3 Unique peptides Liver_Rep3_41_D4 Unique peptides Liver_Rep3_42_D5 Unique peptides Liver_Rep3_43_D6 Unique peptides Liver_Rep3_44_D7 Unique peptides Liver_Rep3_45_D8 Unique peptides Liver_Rep3_46_D9 Unique peptides Liver_Rep3_47_D10 Unique peptides Liver_Rep3_48_D11 Unique peptides Liver_Rep3_49_D12 Unique peptides Liver_Rep3_50_E1 Unique peptides Liver_Rep3_51_E2 Unique peptides Liver_Rep3_52_E3 Unique peptides Liver_Rep3_53_E4 Unique peptides Liver_Rep3_54_E5 Unique peptides Liver_Rep3_55_E6 Unique peptides Liver_Rep3_56_E7 Unique peptides Liver_Rep3_57_E8 Unique peptides Liver_Rep3_58_E9 Unique peptides Liver_Rep3_59_E10 Unique peptides Liver_Rep3_60_E11 Unique peptides Liver_Rep3_61_E12 Unique peptides Liver_Rep3_62_F1 Unique peptides Liver_Rep3_63_F2 Unique peptides Liver_Rep3_64_F3 Unique peptides Liver_Rep3_65_F4 Unique peptides Liver_Rep3_66_F5 Unique peptides Liver_Rep3_67_F6 Unique peptides Liver_Rep3_68_F7 Unique peptides Liver_Rep3_69_F8 Unique peptides Liver_Rep3_70_F9 Unique peptides Liver_Rep3_71_F10 Unique peptides Liver_Rep3_72_F11 Unique peptides Liver_Rep3_73_F12 Unique peptides Liver_Rep3_74_G1 Unique peptides Liver_Rep3_75_G2 Unique peptides Liver_Rep3_76_G3 Unique peptides Liver_Rep3_77_G4 Unique peptides Liver_Rep3_78_G5 Sequence coverage [%] Unique + razor sequence coverage [%] Unique sequence coverage [%] Mol. weight [kDa] Sequence length Sequence lengths Q-value Score Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc1 (2) Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc10 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc11 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc14 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc15 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc16 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc17 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc18 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc19 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc2 (2) Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc20 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc21 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc22 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc23 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc24 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc3 (2) Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc4 (2) Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc5 (2) Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc6 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc8 Identification type 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc9 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac1 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac10 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac11 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac12 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac13 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac14 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac15 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac16 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac17 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac18 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac19 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac2 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac20 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac21 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac22 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac23 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac24 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac3 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac4 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac5 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac6 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac7 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac8 Identification type 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac9 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc1 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc10 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc11 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc12 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc13 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc14 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc15 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc16 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc17 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc18 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc19 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc2 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc20 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc21 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc22 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc23 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc24 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc3 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc4 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc5 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc6 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc7 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc8 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc9 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc12 Identification type 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc13 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc1 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc10 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc11 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc12 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc13 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc14 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc15 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc16 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc17 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc18 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc19 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc2 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc20 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc21 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc22 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc23 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc24 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc3 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc4 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc5 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc6 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc7 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc8 Identification type 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc9 Identification type 20161017_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc7 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F1 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F10_170503153643 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F11 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F12 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F13 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F14 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F15 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F16 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F17 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F18 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F19 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F2 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F20 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F21 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F22 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F23 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F24 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F3 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F4 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F5 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F6 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F7 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F8 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F9 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F1_170427224508 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F10 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F11 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F12 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F13 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F14 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F15 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F16 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F17 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F18 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F19 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F2_170427235251 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F20 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F21 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F22 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F23 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F24 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F3_170428010030 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F4_170428020817 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F5 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F6 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F7 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F8 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F9 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F1 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F10 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F11 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F12 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F13 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F14 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F15 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F16 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F17 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F18 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F19 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F2 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F20 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F21 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F22 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F23 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F24 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F3 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F4 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F5 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F6 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F7 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F8 Identification type 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F9 Identification type Liver_Rep1_31_C6 Identification type Liver_Rep1_32_C7 Identification type Liver_Rep1_33_C8 Identification type Liver_Rep1_34_C9 Identification type Liver_Rep1_35_C10 Identification type Liver_Rep1_36_C11 Identification type Liver_Rep1_37_C12 Identification type Liver_Rep1_38_D1 Identification type Liver_Rep1_39_D2 Identification type Liver_Rep1_40_D3 Identification type Liver_Rep1_41_D4 Identification type Liver_Rep1_42_D5 Identification type Liver_Rep1_43_D6 Identification type Liver_Rep1_44_D7 Identification type Liver_Rep1_45_D8 Identification type Liver_Rep1_46_D9 Identification type Liver_Rep1_47_D10 Identification type Liver_Rep1_48_D11 Identification type Liver_Rep1_49_D12 Identification type Liver_Rep1_50_E1 Identification type Liver_Rep1_51_E2 Identification type Liver_Rep1_52_E3 Identification type Liver_Rep1_53_E4 Identification type Liver_Rep1_54_E5 Identification type Liver_Rep1_55_E6 Identification type Liver_Rep1_56_E7 Identification type Liver_Rep1_57_E8 Identification type Liver_Rep1_58_E9 Identification type Liver_Rep1_59_E10 Identification type Liver_Rep1_60_E11 Identification type Liver_Rep1_61_E12 Identification type Liver_Rep1_62_F1 Identification type Liver_Rep1_63_F2 Identification type Liver_Rep1_64_F3 Identification type Liver_Rep1_65_F4 Identification type Liver_Rep1_66_F5 Identification type Liver_Rep1_67_F6 Identification type Liver_Rep1_68_F7 Identification type Liver_Rep1_69_F8 Identification type Liver_Rep1_70_F9 Identification type Liver_Rep1_71_F10 Identification type Liver_Rep1_72_F11 Identification type Liver_Rep1_73_F12 Identification type Liver_Rep1_74_G1 Identification type Liver_Rep1_75_G2 Identification type Liver_Rep1_76_G3 Identification type Liver_Rep1_77_G4 Identification type Liver_Rep1_78_G5 Identification type Liver_Rep2_31_C6 Identification type Liver_Rep2_32_C7 Identification type Liver_Rep2_33_C8 Identification type Liver_Rep2_34_C9 Identification type Liver_Rep2_35_C10 Identification type Liver_Rep2_36_C11 Identification type Liver_Rep2_37_C12 Identification type Liver_Rep2_38_D1 Identification type Liver_Rep2_39_D2 Identification type Liver_Rep2_40_D3 Identification type Liver_Rep2_41_D4 Identification type Liver_Rep2_42_D5 Identification type Liver_Rep2_43_D6 Identification type Liver_Rep2_44_D7 Identification type Liver_Rep2_45_D8 Identification type Liver_Rep2_46_D9 Identification type Liver_Rep2_47_D10 Identification type Liver_Rep2_48_D11 Identification type Liver_Rep2_49_D12 Identification type Liver_Rep2_50_E1 Identification type Liver_Rep2_51_E2 Identification type Liver_Rep2_52_E3 Identification type Liver_Rep2_53_E4 Identification type Liver_Rep2_54_E5 Identification type Liver_Rep2_55_E6 Identification type Liver_Rep2_56_E7 Identification type Liver_Rep2_57_E8 Identification type Liver_Rep2_58_E9 Identification type Liver_Rep2_59_E10 Identification type Liver_Rep2_60_E11 Identification type Liver_Rep2_61_E12 Identification type Liver_Rep2_62_F1 Identification type Liver_Rep2_63_F2 Identification type Liver_Rep2_64_F3 Identification type Liver_Rep2_65_F4 Identification type Liver_Rep2_66_F5 Identification type Liver_Rep2_67_F6 Identification type Liver_Rep2_68_F7 Identification type Liver_Rep2_69_F8 Identification type Liver_Rep2_70_F9 Identification type Liver_Rep2_71_F10 Identification type Liver_Rep2_72_F11 Identification type Liver_Rep2_73_F12 Identification type Liver_Rep2_74_G1 Identification type Liver_Rep2_75_G2 Identification type Liver_Rep2_76_G3 Identification type Liver_Rep2_77_G4 Identification type Liver_Rep2_78_G5 Identification type Liver_Rep3_31_C6 Identification type Liver_Rep3_32_C7 Identification type Liver_Rep3_33_C8 Identification type Liver_Rep3_34_C9 Identification type Liver_Rep3_35_C10 Identification type Liver_Rep3_36_C11 Identification type Liver_Rep3_37_C12 Identification type Liver_Rep3_38_D1 Identification type Liver_Rep3_39_D2 Identification type Liver_Rep3_40_D3 Identification type Liver_Rep3_41_D4 Identification type Liver_Rep3_42_D5 Identification type Liver_Rep3_43_D6 Identification type Liver_Rep3_44_D7 Identification type Liver_Rep3_45_D8 Identification type Liver_Rep3_46_D9 Identification type Liver_Rep3_47_D10 Identification type Liver_Rep3_48_D11 Identification type Liver_Rep3_49_D12 Identification type Liver_Rep3_50_E1 Identification type Liver_Rep3_51_E2 Identification type Liver_Rep3_52_E3 Identification type Liver_Rep3_53_E4 Identification type Liver_Rep3_54_E5 Identification type Liver_Rep3_55_E6 Identification type Liver_Rep3_56_E7 Identification type Liver_Rep3_57_E8 Identification type Liver_Rep3_58_E9 Identification type Liver_Rep3_59_E10 Identification type Liver_Rep3_60_E11 Identification type Liver_Rep3_61_E12 Identification type Liver_Rep3_62_F1 Identification type Liver_Rep3_63_F2 Identification type Liver_Rep3_64_F3 Identification type Liver_Rep3_65_F4 Identification type Liver_Rep3_66_F5 Identification type Liver_Rep3_67_F6 Identification type Liver_Rep3_68_F7 Identification type Liver_Rep3_69_F8 Identification type Liver_Rep3_70_F9 Identification type Liver_Rep3_71_F10 Identification type Liver_Rep3_72_F11 Identification type Liver_Rep3_73_F12 Identification type Liver_Rep3_74_G1 Identification type Liver_Rep3_75_G2 Identification type Liver_Rep3_76_G3 Identification type Liver_Rep3_77_G4 Identification type Liver_Rep3_78_G5 Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc1 (2) [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc10 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc11 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc14 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc15 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc16 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc17 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc18 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc19 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc2 (2) [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc20 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc21 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc22 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc23 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc24 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc3 (2) [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc4 (2) [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc5 (2) [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc6 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc8 [%] Sequence coverage 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc9 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac1 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac10 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac11 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac12 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac13 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac14 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac15 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac16 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac17 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac18 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac19 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac2 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac20 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac21 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac22 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac23 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac24 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac3 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac4 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac5 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac6 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac7 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac8 [%] Sequence coverage 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac9 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc1 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc10 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc11 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc12 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc13 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc14 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc15 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc16 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc17 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc18 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc19 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc2 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc20 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc21 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc22 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc23 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc24 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc3 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc4 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc5 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc6 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc7 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc8 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc9 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc12 [%] Sequence coverage 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc13 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc1 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc10 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc11 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc12 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc13 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc14 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc15 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc16 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc17 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc18 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc19 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc2 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc20 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc21 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc22 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc23 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc24 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc3 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc4 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc5 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc6 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc7 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc8 [%] Sequence coverage 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc9 [%] Sequence coverage 20161017_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc7 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F1 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F10_170503153643 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F11 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F12 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F13 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F14 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F15 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F16 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F17 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F18 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F19 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F2 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F20 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F21 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F22 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F23 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F24 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F3 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F4 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F5 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F6 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F7 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F8 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F9 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F1_170427224508 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F10 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F11 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F12 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F13 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F14 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F15 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F16 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F17 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F18 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F19 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F2_170427235251 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F20 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F21 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F22 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F23 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F24 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F3_170428010030 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F4_170428020817 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F5 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F6 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F7 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F8 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F9 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F1 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F10 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F11 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F12 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F13 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F14 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F15 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F16 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F17 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F18 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F19 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F2 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F20 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F21 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F22 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F23 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F24 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F3 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F4 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F5 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F6 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F7 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F8 [%] Sequence coverage 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F9 [%] Sequence coverage Liver_Rep1_31_C6 [%] Sequence coverage Liver_Rep1_32_C7 [%] Sequence coverage Liver_Rep1_33_C8 [%] Sequence coverage Liver_Rep1_34_C9 [%] Sequence coverage Liver_Rep1_35_C10 [%] Sequence coverage Liver_Rep1_36_C11 [%] Sequence coverage Liver_Rep1_37_C12 [%] Sequence coverage Liver_Rep1_38_D1 [%] Sequence coverage Liver_Rep1_39_D2 [%] Sequence coverage Liver_Rep1_40_D3 [%] Sequence coverage Liver_Rep1_41_D4 [%] Sequence coverage Liver_Rep1_42_D5 [%] Sequence coverage Liver_Rep1_43_D6 [%] Sequence coverage Liver_Rep1_44_D7 [%] Sequence coverage Liver_Rep1_45_D8 [%] Sequence coverage Liver_Rep1_46_D9 [%] Sequence coverage Liver_Rep1_47_D10 [%] Sequence coverage Liver_Rep1_48_D11 [%] Sequence coverage Liver_Rep1_49_D12 [%] Sequence coverage Liver_Rep1_50_E1 [%] Sequence coverage Liver_Rep1_51_E2 [%] Sequence coverage Liver_Rep1_52_E3 [%] Sequence coverage Liver_Rep1_53_E4 [%] Sequence coverage Liver_Rep1_54_E5 [%] Sequence coverage Liver_Rep1_55_E6 [%] Sequence coverage Liver_Rep1_56_E7 [%] Sequence coverage Liver_Rep1_57_E8 [%] Sequence coverage Liver_Rep1_58_E9 [%] Sequence coverage Liver_Rep1_59_E10 [%] Sequence coverage Liver_Rep1_60_E11 [%] Sequence coverage Liver_Rep1_61_E12 [%] Sequence coverage Liver_Rep1_62_F1 [%] Sequence coverage Liver_Rep1_63_F2 [%] Sequence coverage Liver_Rep1_64_F3 [%] Sequence coverage Liver_Rep1_65_F4 [%] Sequence coverage Liver_Rep1_66_F5 [%] Sequence coverage Liver_Rep1_67_F6 [%] Sequence coverage Liver_Rep1_68_F7 [%] Sequence coverage Liver_Rep1_69_F8 [%] Sequence coverage Liver_Rep1_70_F9 [%] Sequence coverage Liver_Rep1_71_F10 [%] Sequence coverage Liver_Rep1_72_F11 [%] Sequence coverage Liver_Rep1_73_F12 [%] Sequence coverage Liver_Rep1_74_G1 [%] Sequence coverage Liver_Rep1_75_G2 [%] Sequence coverage Liver_Rep1_76_G3 [%] Sequence coverage Liver_Rep1_77_G4 [%] Sequence coverage Liver_Rep1_78_G5 [%] Sequence coverage Liver_Rep2_31_C6 [%] Sequence coverage Liver_Rep2_32_C7 [%] Sequence coverage Liver_Rep2_33_C8 [%] Sequence coverage Liver_Rep2_34_C9 [%] Sequence coverage Liver_Rep2_35_C10 [%] Sequence coverage Liver_Rep2_36_C11 [%] Sequence coverage Liver_Rep2_37_C12 [%] Sequence coverage Liver_Rep2_38_D1 [%] Sequence coverage Liver_Rep2_39_D2 [%] Sequence coverage Liver_Rep2_40_D3 [%] Sequence coverage Liver_Rep2_41_D4 [%] Sequence coverage Liver_Rep2_42_D5 [%] Sequence coverage Liver_Rep2_43_D6 [%] Sequence coverage Liver_Rep2_44_D7 [%] Sequence coverage Liver_Rep2_45_D8 [%] Sequence coverage Liver_Rep2_46_D9 [%] Sequence coverage Liver_Rep2_47_D10 [%] Sequence coverage Liver_Rep2_48_D11 [%] Sequence coverage Liver_Rep2_49_D12 [%] Sequence coverage Liver_Rep2_50_E1 [%] Sequence coverage Liver_Rep2_51_E2 [%] Sequence coverage Liver_Rep2_52_E3 [%] Sequence coverage Liver_Rep2_53_E4 [%] Sequence coverage Liver_Rep2_54_E5 [%] Sequence coverage Liver_Rep2_55_E6 [%] Sequence coverage Liver_Rep2_56_E7 [%] Sequence coverage Liver_Rep2_57_E8 [%] Sequence coverage Liver_Rep2_58_E9 [%] Sequence coverage Liver_Rep2_59_E10 [%] Sequence coverage Liver_Rep2_60_E11 [%] Sequence coverage Liver_Rep2_61_E12 [%] Sequence coverage Liver_Rep2_62_F1 [%] Sequence coverage Liver_Rep2_63_F2 [%] Sequence coverage Liver_Rep2_64_F3 [%] Sequence coverage Liver_Rep2_65_F4 [%] Sequence coverage Liver_Rep2_66_F5 [%] Sequence coverage Liver_Rep2_67_F6 [%] Sequence coverage Liver_Rep2_68_F7 [%] Sequence coverage Liver_Rep2_69_F8 [%] Sequence coverage Liver_Rep2_70_F9 [%] Sequence coverage Liver_Rep2_71_F10 [%] Sequence coverage Liver_Rep2_72_F11 [%] Sequence coverage Liver_Rep2_73_F12 [%] Sequence coverage Liver_Rep2_74_G1 [%] Sequence coverage Liver_Rep2_75_G2 [%] Sequence coverage Liver_Rep2_76_G3 [%] Sequence coverage Liver_Rep2_77_G4 [%] Sequence coverage Liver_Rep2_78_G5 [%] Sequence coverage Liver_Rep3_31_C6 [%] Sequence coverage Liver_Rep3_32_C7 [%] Sequence coverage Liver_Rep3_33_C8 [%] Sequence coverage Liver_Rep3_34_C9 [%] Sequence coverage Liver_Rep3_35_C10 [%] Sequence coverage Liver_Rep3_36_C11 [%] Sequence coverage Liver_Rep3_37_C12 [%] Sequence coverage Liver_Rep3_38_D1 [%] Sequence coverage Liver_Rep3_39_D2 [%] Sequence coverage Liver_Rep3_40_D3 [%] Sequence coverage Liver_Rep3_41_D4 [%] Sequence coverage Liver_Rep3_42_D5 [%] Sequence coverage Liver_Rep3_43_D6 [%] Sequence coverage Liver_Rep3_44_D7 [%] Sequence coverage Liver_Rep3_45_D8 [%] Sequence coverage Liver_Rep3_46_D9 [%] Sequence coverage Liver_Rep3_47_D10 [%] Sequence coverage Liver_Rep3_48_D11 [%] Sequence coverage Liver_Rep3_49_D12 [%] Sequence coverage Liver_Rep3_50_E1 [%] Sequence coverage Liver_Rep3_51_E2 [%] Sequence coverage Liver_Rep3_52_E3 [%] Sequence coverage Liver_Rep3_53_E4 [%] Sequence coverage Liver_Rep3_54_E5 [%] Sequence coverage Liver_Rep3_55_E6 [%] Sequence coverage Liver_Rep3_56_E7 [%] Sequence coverage Liver_Rep3_57_E8 [%] Sequence coverage Liver_Rep3_58_E9 [%] Sequence coverage Liver_Rep3_59_E10 [%] Sequence coverage Liver_Rep3_60_E11 [%] Sequence coverage Liver_Rep3_61_E12 [%] Sequence coverage Liver_Rep3_62_F1 [%] Sequence coverage Liver_Rep3_63_F2 [%] Sequence coverage Liver_Rep3_64_F3 [%] Sequence coverage Liver_Rep3_65_F4 [%] Sequence coverage Liver_Rep3_66_F5 [%] Sequence coverage Liver_Rep3_67_F6 [%] Sequence coverage Liver_Rep3_68_F7 [%] Sequence coverage Liver_Rep3_69_F8 [%] Sequence coverage Liver_Rep3_70_F9 [%] Sequence coverage Liver_Rep3_71_F10 [%] Sequence coverage Liver_Rep3_72_F11 [%] Sequence coverage Liver_Rep3_73_F12 [%] Sequence coverage Liver_Rep3_74_G1 [%] Sequence coverage Liver_Rep3_75_G2 [%] Sequence coverage Liver_Rep3_76_G3 [%] Sequence coverage Liver_Rep3_77_G4 [%] Sequence coverage Liver_Rep3_78_G5 [%] Intensity Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc1 (2) Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc10 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc11 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc14 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc15 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc16 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc17 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc18 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc19 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc2 (2) Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc20 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc21 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc22 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc23 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc24 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc3 (2) Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc4 (2) Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc5 (2) Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc6 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc8 Intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc9 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac1 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac10 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac11 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac12 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac13 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac14 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac15 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac16 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac17 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac18 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac19 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac2 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac20 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac21 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac22 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac23 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac24 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac3 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac4 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac5 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac6 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac7 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac8 Intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac9 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc1 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc10 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc11 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc12 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc13 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc14 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc15 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc16 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc17 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc18 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc19 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc2 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc20 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc21 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc22 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc23 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc24 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc3 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc4 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc5 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc6 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc7 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc8 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc9 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc12 Intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc13 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc1 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc10 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc11 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc12 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc13 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc14 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc15 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc16 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc17 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc18 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc19 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc2 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc20 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc21 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc22 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc23 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc24 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc3 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc4 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc5 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc6 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc7 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc8 Intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc9 Intensity 20161017_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc7 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F1 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F10_170503153643 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F11 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F12 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F13 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F14 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F15 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F16 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F17 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F18 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F19 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F2 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F20 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F21 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F22 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F23 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F24 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F3 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F4 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F5 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F6 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F7 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F8 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F9 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F1_170427224508 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F10 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F11 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F12 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F13 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F14 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F15 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F16 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F17 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F18 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F19 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F2_170427235251 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F20 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F21 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F22 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F23 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F24 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F3_170428010030 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F4_170428020817 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F5 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F6 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F7 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F8 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F9 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F1 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F10 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F11 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F12 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F13 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F14 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F15 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F16 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F17 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F18 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F19 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F2 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F20 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F21 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F22 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F23 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F24 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F3 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F4 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F5 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F6 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F7 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F8 Intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F9 Intensity 1_31_C6 Intensity 1_32_C7 Intensity 1_33_C8 Intensity 1_34_C9 Intensity 1_35_C10 Intensity 1_36_C11 Intensity 1_37_C12 Intensity 1_38_D1 Intensity 1_39_D2 Intensity 1_40_D3 Intensity 1_41_D4 Intensity 1_42_D5 Intensity 1_43_D6 Intensity 1_44_D7 Intensity 1_45_D8 Intensity 1_46_D9 Intensity 1_47_D10 Intensity 1_48_D11 Intensity 1_49_D12 Intensity 1_50_E1 Intensity 1_51_E2 Intensity 1_52_E3 Intensity 1_53_E4 Intensity 1_54_E5 Intensity 1_55_E6 Intensity 1_56_E7 Intensity 1_57_E8 Intensity 1_58_E9 Intensity 1_59_E10 Intensity 1_60_E11 Intensity 1_61_E12 Intensity 1_62_F1 Intensity 1_63_F2 Intensity 1_64_F3 Intensity 1_65_F4 Intensity 1_66_F5 Intensity 1_67_F6 Intensity 1_68_F7 Intensity 1_69_F8 Intensity 1_70_F9 Intensity 1_71_F10 Intensity 1_72_F11 Intensity 1_73_F12 Intensity 1_74_G1 Intensity 1_75_G2 Intensity 1_76_G3 Intensity 1_77_G4 Intensity 1_78_G5 Intensity 2_31_C6 Intensity 2_32_C7 Intensity 2_33_C8 Intensity 2_34_C9 Intensity 2_35_C10 Intensity 2_36_C11 Intensity 2_37_C12 Intensity 2_38_D1 Intensity 2_39_D2 Intensity 2_40_D3 Intensity 2_41_D4 Intensity 2_42_D5 Intensity 2_43_D6 Intensity 2_44_D7 Intensity 2_45_D8 Intensity 2_46_D9 Intensity 2_47_D10 Intensity 2_48_D11 Intensity 2_49_D12 Intensity 2_50_E1 Intensity 2_51_E2 Intensity 2_52_E3 Intensity 2_53_E4 Intensity 2_54_E5 Intensity 2_55_E6 Intensity 2_56_E7 Intensity 2_57_E8 Intensity 2_58_E9 Intensity 2_59_E10 Intensity 2_60_E11 Intensity 2_61_E12 Intensity 2_62_F1 Intensity 2_63_F2 Intensity 2_64_F3 Intensity 2_65_F4 Intensity 2_66_F5 Intensity 2_67_F6 Intensity 2_68_F7 Intensity 2_69_F8 Intensity 2_70_F9 Intensity 2_71_F10 Intensity 2_72_F11 Intensity 2_73_F12 Intensity 2_74_G1 Intensity 2_75_G2 Intensity 2_76_G3 Intensity 2_77_G4 Intensity 2_78_G5 Intensity 3_31_C6 Intensity 3_32_C7 Intensity 3_33_C8 Intensity 3_34_C9 Intensity 3_35_C10 Intensity 3_36_C11 Intensity 3_37_C12 Intensity 3_38_D1 Intensity 3_39_D2 Intensity 3_40_D3 Intensity 3_41_D4 Intensity 3_42_D5 Intensity 3_43_D6 Intensity 3_44_D7 Intensity 3_45_D8 Intensity 3_46_D9 Intensity 3_47_D10 Intensity 3_48_D11 Intensity 3_49_D12 Intensity 3_50_E1 Intensity 3_51_E2 Intensity 3_52_E3 Intensity 3_53_E4 Intensity 3_54_E5 Intensity 3_55_E6 Intensity 3_56_E7 Intensity 3_57_E8 Intensity 3_58_E9 Intensity 3_59_E10 Intensity 3_60_E11 Intensity 3_61_E12 Intensity 3_62_F1 Intensity 3_63_F2 Intensity 3_64_F3 Intensity 3_65_F4 Intensity 3_66_F5 Intensity 3_67_F6 Intensity 3_68_F7 Intensity 3_69_F8 Intensity 3_70_F9 Intensity 3_71_F10 Intensity 3_72_F11 Intensity 3_73_F12 Intensity 3_74_G1 Intensity 3_75_G2 Intensity 3_76_G3 Intensity 3_77_G4 Intensity 3_78_G5 LFQ intensity 1_31_C6 LFQ intensity 1_32_C7 LFQ intensity 1_33_C8 LFQ intensity 1_34_C9 LFQ intensity 1_35_C10 LFQ intensity 1_36_C11 LFQ intensity 1_37_C12 LFQ intensity 1_38_D1 LFQ intensity 1_39_D2 LFQ intensity 1_40_D3 LFQ intensity 1_41_D4 LFQ intensity 1_42_D5 LFQ intensity 1_43_D6 LFQ intensity 1_44_D7 LFQ intensity 1_45_D8 LFQ intensity 1_46_D9 LFQ intensity 1_47_D10 LFQ intensity 1_48_D11 LFQ intensity 1_49_D12 LFQ intensity 1_50_E1 LFQ intensity 1_51_E2 LFQ intensity 1_52_E3 LFQ intensity 1_53_E4 LFQ intensity 1_54_E5 LFQ intensity 1_55_E6 LFQ intensity 1_56_E7 LFQ intensity 1_57_E8 LFQ intensity 1_58_E9 LFQ intensity 1_59_E10 LFQ intensity 1_60_E11 LFQ intensity 1_61_E12 LFQ intensity 1_62_F1 LFQ intensity 1_63_F2 LFQ intensity 1_64_F3 LFQ intensity 1_65_F4 LFQ intensity 1_66_F5 LFQ intensity 1_67_F6 LFQ intensity 1_68_F7 LFQ intensity 1_69_F8 LFQ intensity 1_70_F9 LFQ intensity 1_71_F10 LFQ intensity 1_72_F11 LFQ intensity 1_73_F12 LFQ intensity 1_74_G1 LFQ intensity 1_75_G2 LFQ intensity 1_76_G3 LFQ intensity 1_77_G4 LFQ intensity 1_78_G5 LFQ intensity 2_31_C6 LFQ intensity 2_32_C7 LFQ intensity 2_33_C8 LFQ intensity 2_34_C9 LFQ intensity 2_35_C10 LFQ intensity 2_36_C11 LFQ intensity 2_37_C12 LFQ intensity 2_38_D1 LFQ intensity 2_39_D2 LFQ intensity 2_40_D3 LFQ intensity 2_41_D4 LFQ intensity 2_42_D5 LFQ intensity 2_43_D6 LFQ intensity 2_44_D7 LFQ intensity 2_45_D8 LFQ intensity 2_46_D9 LFQ intensity 2_47_D10 LFQ intensity 2_48_D11 LFQ intensity 2_49_D12 LFQ intensity 2_50_E1 LFQ intensity 2_51_E2 LFQ intensity 2_52_E3 LFQ intensity 2_53_E4 LFQ intensity 2_54_E5 LFQ intensity 2_55_E6 LFQ intensity 2_56_E7 LFQ intensity 2_57_E8 LFQ intensity 2_58_E9 LFQ intensity 2_59_E10 LFQ intensity 2_60_E11 LFQ intensity 2_61_E12 LFQ intensity 2_62_F1 LFQ intensity 2_63_F2 LFQ intensity 2_64_F3 LFQ intensity 2_65_F4 LFQ intensity 2_66_F5 LFQ intensity 2_67_F6 LFQ intensity 2_68_F7 LFQ intensity 2_69_F8 LFQ intensity 2_70_F9 LFQ intensity 2_71_F10 LFQ intensity 2_72_F11 LFQ intensity 2_73_F12 LFQ intensity 2_74_G1 LFQ intensity 2_75_G2 LFQ intensity 2_76_G3 LFQ intensity 2_77_G4 LFQ intensity 2_78_G5 LFQ intensity 3_31_C6 LFQ intensity 3_32_C7 LFQ intensity 3_33_C8 LFQ intensity 3_34_C9 LFQ intensity 3_35_C10 LFQ intensity 3_36_C11 LFQ intensity 3_37_C12 LFQ intensity 3_38_D1 LFQ intensity 3_39_D2 LFQ intensity 3_40_D3 LFQ intensity 3_41_D4 LFQ intensity 3_42_D5 LFQ intensity 3_43_D6 LFQ intensity 3_44_D7 LFQ intensity 3_45_D8 LFQ intensity 3_46_D9 LFQ intensity 3_47_D10 LFQ intensity 3_48_D11 LFQ intensity 3_49_D12 LFQ intensity 3_50_E1 LFQ intensity 3_51_E2 LFQ intensity 3_52_E3 LFQ intensity 3_53_E4 LFQ intensity 3_54_E5 LFQ intensity 3_55_E6 LFQ intensity 3_56_E7 LFQ intensity 3_57_E8 LFQ intensity 3_58_E9 LFQ intensity 3_59_E10 LFQ intensity 3_60_E11 LFQ intensity 3_61_E12 LFQ intensity 3_62_F1 LFQ intensity 3_63_F2 LFQ intensity 3_64_F3 LFQ intensity 3_65_F4 LFQ intensity 3_66_F5 LFQ intensity 3_67_F6 LFQ intensity 3_68_F7 LFQ intensity 3_69_F8 LFQ intensity 3_70_F9 LFQ intensity 3_71_F10 LFQ intensity 3_72_F11 LFQ intensity 3_73_F12 LFQ intensity 3_74_G1 LFQ intensity 3_75_G2 LFQ intensity 3_76_G3 LFQ intensity 3_77_G4 LFQ intensity 3_78_G5 MS/MS count Liver_Rep1_31_C6 MS/MS count Liver_Rep1_32_C7 MS/MS count Liver_Rep1_33_C8 MS/MS count Liver_Rep1_34_C9 MS/MS count Liver_Rep1_35_C10 MS/MS count Liver_Rep1_36_C11 MS/MS count Liver_Rep1_37_C12 MS/MS count Liver_Rep1_38_D1 MS/MS count Liver_Rep1_39_D2 MS/MS count Liver_Rep1_40_D3 MS/MS count Liver_Rep1_41_D4 MS/MS count Liver_Rep1_42_D5 MS/MS count Liver_Rep1_43_D6 MS/MS count Liver_Rep1_44_D7 MS/MS count Liver_Rep1_45_D8 MS/MS count Liver_Rep1_46_D9 MS/MS count Liver_Rep1_47_D10 MS/MS count Liver_Rep1_48_D11 MS/MS count Liver_Rep1_49_D12 MS/MS count Liver_Rep1_50_E1 MS/MS count Liver_Rep1_51_E2 MS/MS count Liver_Rep1_52_E3 MS/MS count Liver_Rep1_53_E4 MS/MS count Liver_Rep1_54_E5 MS/MS count Liver_Rep1_55_E6 MS/MS count Liver_Rep1_56_E7 MS/MS count Liver_Rep1_57_E8 MS/MS count Liver_Rep1_58_E9 MS/MS count Liver_Rep1_59_E10 MS/MS count Liver_Rep1_60_E11 MS/MS count Liver_Rep1_61_E12 MS/MS count Liver_Rep1_62_F1 MS/MS count Liver_Rep1_63_F2 MS/MS count Liver_Rep1_64_F3 MS/MS count Liver_Rep1_65_F4 MS/MS count Liver_Rep1_66_F5 MS/MS count Liver_Rep1_67_F6 MS/MS count Liver_Rep1_68_F7 MS/MS count Liver_Rep1_69_F8 MS/MS count Liver_Rep1_70_F9 MS/MS count Liver_Rep1_71_F10 MS/MS count Liver_Rep1_72_F11 MS/MS count Liver_Rep1_73_F12 MS/MS count Liver_Rep1_74_G1 MS/MS count Liver_Rep1_75_G2 MS/MS count Liver_Rep1_76_G3 MS/MS count Liver_Rep1_77_G4 MS/MS count Liver_Rep1_78_G5 MS/MS count Liver_Rep2_31_C6 MS/MS count Liver_Rep2_32_C7 MS/MS count Liver_Rep2_33_C8 MS/MS count Liver_Rep2_34_C9 MS/MS count Liver_Rep2_35_C10 MS/MS count Liver_Rep2_36_C11 MS/MS count Liver_Rep2_37_C12 MS/MS count Liver_Rep2_38_D1 MS/MS count Liver_Rep2_39_D2 MS/MS count Liver_Rep2_40_D3 MS/MS count Liver_Rep2_41_D4 MS/MS count Liver_Rep2_42_D5 MS/MS count Liver_Rep2_43_D6 MS/MS count Liver_Rep2_44_D7 MS/MS count Liver_Rep2_45_D8 MS/MS count Liver_Rep2_46_D9 MS/MS count Liver_Rep2_47_D10 MS/MS count Liver_Rep2_48_D11 MS/MS count Liver_Rep2_49_D12 MS/MS count Liver_Rep2_50_E1 MS/MS count Liver_Rep2_51_E2 MS/MS count Liver_Rep2_52_E3 MS/MS count Liver_Rep2_53_E4 MS/MS count Liver_Rep2_54_E5 MS/MS count Liver_Rep2_55_E6 MS/MS count Liver_Rep2_56_E7 MS/MS count Liver_Rep2_57_E8 MS/MS count Liver_Rep2_58_E9 MS/MS count Liver_Rep2_59_E10 MS/MS count Liver_Rep2_60_E11 MS/MS count Liver_Rep2_61_E12 MS/MS count Liver_Rep2_62_F1 MS/MS count Liver_Rep2_63_F2 MS/MS count Liver_Rep2_64_F3 MS/MS count Liver_Rep2_65_F4 MS/MS count Liver_Rep2_66_F5 MS/MS count Liver_Rep2_67_F6 MS/MS count Liver_Rep2_68_F7 MS/MS count Liver_Rep2_69_F8 MS/MS count Liver_Rep2_70_F9 MS/MS count Liver_Rep2_71_F10 MS/MS count Liver_Rep2_72_F11 MS/MS count Liver_Rep2_73_F12 MS/MS count Liver_Rep2_74_G1 MS/MS count Liver_Rep2_75_G2 MS/MS count Liver_Rep2_76_G3 MS/MS count Liver_Rep2_77_G4 MS/MS count Liver_Rep2_78_G5 MS/MS count Liver_Rep3_31_C6 MS/MS count Liver_Rep3_32_C7 MS/MS count Liver_Rep3_33_C8 MS/MS count Liver_Rep3_34_C9 MS/MS count Liver_Rep3_35_C10 MS/MS count Liver_Rep3_36_C11 MS/MS count Liver_Rep3_37_C12 MS/MS count Liver_Rep3_38_D1 MS/MS count Liver_Rep3_39_D2 MS/MS count Liver_Rep3_40_D3 MS/MS count Liver_Rep3_41_D4 MS/MS count Liver_Rep3_42_D5 MS/MS count Liver_Rep3_43_D6 MS/MS count Liver_Rep3_44_D7 MS/MS count Liver_Rep3_45_D8 MS/MS count Liver_Rep3_46_D9 MS/MS count Liver_Rep3_47_D10 MS/MS count Liver_Rep3_48_D11 MS/MS count Liver_Rep3_49_D12 MS/MS count Liver_Rep3_50_E1 MS/MS count Liver_Rep3_51_E2 MS/MS count Liver_Rep3_52_E3 MS/MS count Liver_Rep3_53_E4 MS/MS count Liver_Rep3_54_E5 MS/MS count Liver_Rep3_55_E6 MS/MS count Liver_Rep3_56_E7 MS/MS count Liver_Rep3_57_E8 MS/MS count Liver_Rep3_58_E9 MS/MS count Liver_Rep3_59_E10 MS/MS count Liver_Rep3_60_E11 MS/MS count Liver_Rep3_61_E12 MS/MS count Liver_Rep3_62_F1 MS/MS count Liver_Rep3_63_F2 MS/MS count Liver_Rep3_64_F3 MS/MS count Liver_Rep3_65_F4 MS/MS count Liver_Rep3_66_F5 MS/MS count Liver_Rep3_67_F6 MS/MS count Liver_Rep3_68_F7 MS/MS count Liver_Rep3_69_F8 MS/MS count Liver_Rep3_70_F9 MS/MS count Liver_Rep3_71_F10 MS/MS count Liver_Rep3_72_F11 MS/MS count Liver_Rep3_73_F12 MS/MS count Liver_Rep3_74_G1 MS/MS count Liver_Rep3_75_G2 MS/MS count Liver_Rep3_76_G3 MS/MS count Liver_Rep3_77_G4 MS/MS count Liver_Rep3_78_G5 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc1 (2) LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc10 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc11 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc14 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc15 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc16 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc17 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc18 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc19 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc2 (2) LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc20 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc21 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc22 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc23 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc24 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc3 (2) LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc4 (2) LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc5 (2) LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc6 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc8 LFQ intensity 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc9 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac1 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac10 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac11 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac12 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac13 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac14 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac15 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac16 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac17 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac18 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac19 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac2 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac20 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac21 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac22 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac23 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac24 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac3 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac4 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac5 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac6 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac7 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac8 LFQ intensity 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac9 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc1 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc10 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc11 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc12 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc13 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc14 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc15 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc16 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc17 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc18 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc19 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc2 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc20 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc21 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc22 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc23 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc24 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc3 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc4 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc5 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc6 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc7 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc8 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc9 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc12 LFQ intensity 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc13 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc1 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc10 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc11 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc12 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc13 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc14 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc15 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc16 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc17 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc18 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc19 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc2 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc20 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc21 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc22 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc23 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc24 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc3 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc4 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc5 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc6 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc7 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc8 LFQ intensity 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc9 LFQ intensity 20161017_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc7 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F1 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F10_170503153643 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F11 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F12 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F13 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F14 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F15 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F16 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F17 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F18 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F19 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F2 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F20 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F21 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F22 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F23 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F24 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F3 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F4 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F5 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F6 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F7 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F8 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F9 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F1_170427224508 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F10 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F11 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F12 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F13 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F14 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F15 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F16 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F17 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F18 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F19 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F2_170427235251 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F20 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F21 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F22 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F23 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F24 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F3_170428010030 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F4_170428020817 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F5 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F6 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F7 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F8 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F9 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F1 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F10 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F11 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F12 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F13 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F14 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F15 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F16 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F17 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F18 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F19 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F2 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F20 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F21 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F22 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F23 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F24 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F3 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F4 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F5 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F6 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F7 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F8 LFQ intensity 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F9 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc1 (2) MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc10 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc11 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc14 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc15 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc16 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc17 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc18 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc19 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc2 (2) MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc20 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc21 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc22 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc23 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc24 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc3 (2) MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc4 (2) MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc5 (2) MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc6 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc8 MS/MS count 20161006_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc9 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac1 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac10 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac11 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac12 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac13 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac14 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac15 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac16 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac17 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac18 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac19 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac2 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac20 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac21 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac22 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac23 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac24 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac3 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac4 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac5 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac6 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac7 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac8 MS/MS count 20161006_QEp2_PhGe_SA_LC12-14_Top6Top14Depl_SDBC_24Frac_Frac9 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc1 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc10 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc11 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc12 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc13 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc14 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc15 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc16 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc17 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc18 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc19 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc2 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc20 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc21 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc22 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc23 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc24 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc3 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc4 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc5 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc6 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc7 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc8 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads__24Frc_Frc9 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc12 MS/MS count 20161008_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc13 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc1 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc10 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc11 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc12 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc13 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc14 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc15 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc16 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc17 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc18 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc19 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc2 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc20 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc21 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc22 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc23 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc24 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc3 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc4 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc5 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc6 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc7 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc8 MS/MS count 20161013_QEp2_PhGe_SA_LC12-14_Top14Top6Depl_SDB_24Frc_Frc9 MS/MS count 20161017_QEp1_PhGe_SA_LC12-14_Top14Top6Depl_Beads_24Frc_Frc7 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F1 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F10_170503153643 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F11 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F12 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F13 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F14 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F15 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F16 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F17 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F18 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F19 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F2 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F20 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F21 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F22 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F23 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F24 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F3 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F4 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F5 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F6 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F7 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F8 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Cirrhosis_F9 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F1_170427224508 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F10 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F11 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F12 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F13 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F14 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F15 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F16 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F17 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F18 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F19 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F2_170427235251 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F20 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F21 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F22 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F23 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F24 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F3_170428010030 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F4_170428020817 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F5 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F6 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F7 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F8 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_Healthy_F9 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F1 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F10 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F11 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F12 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F13 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F14 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F15 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F16 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F17 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F18 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F19 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F2 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F20 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F21 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F22 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F23 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F24 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F3 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F4 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F5 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F6 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F7 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F8 MS/MS count 20170405_QEp2_PhGe_SA_LC12-14_Liver_Human_NAFLD_F9 MS/MS count Only identified by site Reverse Potential contaminant id Peptide IDs Peptide is razor Mod. peptide IDs Evidence IDs MS/MS IDs Best MS/MS Oxidation (M) site IDs Oxidation (M) site positions +"P01911;Q29830;Q9MXZ4;Q3LTJ8;Q3LTJ4;Q3LRY0;Q8HWN3;Q9TQ83;O98047;J7QWX7;Q860T0;O98046;O78048;Q9TP93;Q9GJG1;Q30130;C8CBI3;B7VU65;P79494;Q95HN3;D7GL11;W1IA32;W1I9X3;W0HIJ7;V5JAC9;U6EFL1;T1R3D1;S6DRI6;S4TZG6;S0F2J6;R9WRP1;R4QGJ7;Q9TQ40;Q9TQ39;Q9GJ37;Q9BCS7;Q8MGY6;Q860S9;Q75NJ4;Q6T713;Q6QUQ1;Q4A1G9;Q2PBC3;Q1JRP4;Q1G100;Q1G0Z8;Q19K82;O19502;M9PAL6;M9PAH4;M9PAH2;M9PA34;M9P9Y0;M9P9X3;M9P9P1;M9P9N9;M9P9N6;M9P979;M9P978;M9P976;M9P8N0;M9P8M9;M9P8M8;M9P8M7;L0BVZ3;K7ZK48;J7K4T3;J7F7D3;I6Z114;I6NVX3;I6M556;H8WV97;H8WV96;H8WV95;H8WV94;H6A2E5;H2DML3;H2BDR9;G9I2P4;G9I2P3;G9HW13;G9HW12;G5EM93;G4XPM0;G1EMY4;G1EMY3;G1EMX6;G1EMX5;G1EMX4;G1EMX3;G1EMW2;G1EMW1;G1CD91;G0ZMM9;G0ZMM8;G0ZDX1;G0Z8F8;F8RHL4;F8RHL2;F8R8N1;F8R8N0;F8LSY3;F6KS22;F4YZX5;F4YZX4;F4YZX3;F4YZX2;F4YZX1;F4YZW8;F4YZW5;F4YZW4;F4YZW3;F4YUA8;F4YUA4;F2X658;F2X654;F2VS02;F2VNX0;F2VNW9;F2VNW1;F2VNV6;F2VNV5;F2VNV3;F2VNU8;F1CCP7;F1CCP1;F1CCN9;F1CCN5;F1CCN2;F1CCL9;F0V6B9;E7BYD5;E5DCR4;E3SWQ0;E3SWP2;E3SWP0;E3SWN9;E3SWN8;E1V2J9;E0X9M7;D9UAX4;D9U3H6;D9IFQ2;D7NST0;D7NR21;D7GL12;D6MJL2;D6MJC0;D6MJB9;D6BPR2;D5M8A0;D5M899;D5G2K8;D5FZP5;D5FZP4;D5FZP1;D5FZP0;D5FUG7;D5FIF2;D5FIF0;D5FIE9;D5FIE8;D5FIE7;D5FIE6;D5FIE5;D5FIE4;D5FIE2;D5FID9;D5FID8;D5FID7;D5FID6;D5FID4;D5FID3;D5FID2;D5FID1;D5FID0;D5FIC9;D5FIC8;D3U4F4;D3U4E8;D3U4E3;D2DL44;D1G118;C9E1I9;C8CJD1;C8C9V7;C7FDX1;C6L820;C5IAX3;C0LAC0;B3V8R4;B2ZCY0;B2NJ39;B2NJ35;B2CKL1;B0LUU5;B0LUU3;A8D9Z3;A7X5K1;A7X5I8;A7UHG8;A7UHG7;A7UHG5;A7UHG3;A7UHG1;A1Z0K9;A0N0W3;A0N0W0;A0AQZ0;A0A1L2BMM5;A0A1L2BMJ3;A0A1C8DXB5;A0A1C8DXA5;A0A1C8DWG2;A0A1C8DW70;A0A1C8DW15;A0A1C8DV34;A0A1C8DT73;A0A186VP32;A0A186VNI1;A0A186VNH1;A0A186VNF7;A0A186VNF6;A0A141AZI5;A0A141AZH7;A0A120N5Z9;A0A0X7YLI6;A0A0U2ZSR0;A0A0N7A4S0;A0A0N7A4R1;A0A0N7A4M2;A0A0K2GUL9;A0A0K0PYY5;A0A0G2R1S9;A0A0G2R1I3;A0A0F7VJG9;A0A0E3DDV2;A0A0E3DCN6;A0A0E3DCJ0;A0A0E3DCG7;A0A0A8R917;A0A0A7CAZ6;A0A0A7CAY4;A0A0A7CAL0;A0A0A7CA42;A0A0A7C521;A0A0A7C487;A0A0A7C3A8;A0A090KNI6;A0A024J4R7;Q5JZX3;Q29791;Q30008;A0A1G4NQW7;Q3LA86;F2QL89;A0A1N7SY41;A0A1L7H746;A0A1L7H722;A0A1L7H6Y2;A0A1J0A2H3;A0A1D8MAL6;A0A1N7SY11;A0A1N7SXR2;M1UZ77;U3PQT7;A0A0A0WGI7;S6BVM7;S6B6T3;S6AP21;X5DNQ0;D7RIH9;D7RIH8;A0A087WX18;P01912;Q29648;Q9MXZ3;Q95381;Q31644;Q29649;Q29646;O19723;Q9MY17;Q9MY00;Q29804;O19696;Q8MGY3;Q8MGY2;Q29687;Q8WMA1;Q9TQ23;Q9GIL1;Q8WLR9;Q861B8;Q860S1;Q860B8;O19592;C1JJS3;Q29957;O02951;H8WV85;O19791;Q95386;O77965;Q9BCQ0;Q29706;Q9Y4H8;Q8HWN2;Q30111;Q29711;O19664;A5YP91;Q9MYA0;Q6LBW8;Q29905;Q9MYD9;Q9TPB7;Q9GJM1;Q9BCP6;Q95IE6;Q6PYB1;Q95IG7;J9PW10;H2BDR8;H2BDR7;G1EMY2;G1EMY1;G1EMW3;G0WVE0;F1CCP5;E7EI14;D5FIF1;D5FIE3;D5FIE1;D5FIE0;D5FID5;B2NJ37;B2NJ36;A0A180H5V1;A0A0G4KC17;A0A0E3DDC0;A0A090KQC4;A0A090KJ16;V5J9Z3;U5IRI6;Q5DKQ6;N1NTB7;M9P981;M4YUW8;L0BXM1;L0BXK2;L0BX03;L0BVP2;L0BVN9;I7B299;I6NS89;H8WV99;H6A2E4;G1EMX1;G1EMX0;G1EMW8;G1EMW7;G1EMW6;G1EMW5;G1EMW4;G1EMW0;F4YZX0;F1CCM6;E3SWP5;E3SWP4;E3SGC8;A0A141AZI2;A0A0X7YL99;A0A0N7A6U7;A0A0N7A564;A0A075QB04;W8XAA3;W8PC28;V5RNU3;U5ISB2;U5IQQ1;T1WFE7;T1R3A9;T1R352;S4TZL3;S4TZG3;S4TZE4;S4T759;S4T758;S4T716;S4T713;S4T710;S4T706;S4T6U6;S4T6U3;S4T6U0;S4T6T7;S4T6R0;S4T6Q9;S4T6Q8;S4T6M2;S4T6M1;S4T6L9;S4T6L5;S0F3K2;S0F2C9;S0F2C7;R9R082;R4S853;R4S813;R4KZR5;R4KXM4;Q9XRW9;Q9UM38;Q9UM34;Q9UM29;Q9TQ63;Q9TQ48;Q9MYG3;Q9GJ28;Q9BD27;Q9BD24;Q9BCM3;Q9BCM2;Q95354;Q8MGZ2;Q861G1;Q861F8;Q861B0;Q860I1;Q860E4;Q860E3;Q7YQA7;Q7YQA6;Q7YQA2;Q7YPZ4;Q7JGS8;Q6TKG7;Q6RCP7;Q4U4M7;Q45G74;Q45G73;Q45FZ4;Q2PZR1;Q2LDE4;Q29813;Q29690;Q1EIR2;Q19K84;Q06RK2;P79548;O77962;O19660;N1NVA9;N0A2S4;N0A2R4;N0A0M7;M9PNX4;M9PNP1;M9PAI9;M9PAI1;M9PAI0;M9PAH9;M9PAH5;M9PAH3;M9PAH1;M9PAH0;M9PA40;M9P9Y9;M9P9Y7;M9P9Y2;M9P9X6;M9P9S5;M9P9R6;M9P9P9;M9P9P6;M9P9P4;M9P9N8;M9P9F3;M9P9B1;M9P9A5;M9P984;M9P8Q0;M9P8P2;M9P8N8;M9P8N6;M9P8N4;M9P8N2;M9P8N1;M4YQI1;M4MGI2;M4MGH8;M4MEW2;M4MDE5;M4MD36;L0BXQ5;L0BXN7;L0BXM6;L0BXK6;L0BX08;L0BWW8;L0BVW9;L0BVT0;K7WK01;K4ULG7;J9Z200;J7RFS4;J7K6R9;J7K3J3;J7K1E4;J7K1D9;J7JXR5;J7F8N2;I7KP34;I6XJJ4;I6NXM9;I6NWK5;I6NS51;I2G7Y5;H6A2E9;H6A2E6;H2DML4;H2BDT5;H2BDS9;H2BDS5;H2AM04;G9I2P8;G9HWB7;G9HW11;G9HRM4;G1EN21;G1EN19;G1EN16;G1EN15;G1EN13;G1EN10;G1EN09;G1EN08;G1EN05;G1EN04;G1EN01;G1EMZ7;G1EMZ6;G1EMY8;G1EMY6;G1EMX9;G1EMW9;G0ZDX3;G0Z8G1;G0X8V1;G0X8V0;G0X8U9;G0X8U8;G0X8U7;G0X8U6;G0WVE1;G0WVD8;G0WVD7;G0WVD6;G0WVD4;G0WVD3;F8SL11;F8SL06;F8RHN1;F8RHN0;F8RHM9;F8RHM3;F8RHM2;F8RHL8;F8RHL5;F8RHL3;F8RHL0;F8RHK7;F8RHK6;F8RHK5;F8RHJ9;F8RHJ6;F8RHJ5;F8RHJ4;F8RHJ3;F8R8N2;F8R8M9;F8R1E3;F6KS31;F6KS30;F6KS28;F5BR65;F4YZW7;F4YZW6;F4YUB0;F4YUA9;F4YUA7;F4NBN8;F2X668;F2X666;F2X662;F2X661;F2X659;F2X657;F2VPA0;F2VNW7;F2VNW5;F2VNV9;F2VNV4;F1CCR0;F1CCP9;F1CCP8;F1CCN6;F1CCN4;F1CCM5;F1CCM0;F1CCL8;F1CCL7;F1AQS1;E9NVH4;E9ABY0;E5RV92;E5D6L8;E3SWQ1;E3SWP8;E3SWP3;E3SGD5;E3SGD4;E3SGD3;E3SGD1;E2GJN8;E2GJN6;E2DHC1;E2D5U5;E2D5U3;E2D5U1;E0X9M9;E0WMV5;D9UC11;D7R0V0;D7NST2;D7NPQ7;D7NPQ6;D7NP77;D7NP76;D7GN78;D7GN77;D7GN76;D7GN74;D7GN73;D6PZZ6;D6MKY5;D6MJB8;D5M8A3;D5M8A2;D5L9F2;D5L9F0;D5L9E9;D5L9E8;D5L9E7;D5G2J6;D5FUG2;D3U4F2;D3U4E9;D3JV16;D3JV13;D3JV08;D2SSL5;D1G120;D1G119;D0VE49;D0VE48;D0VE45;D0ENM6;C9W8B4;C9E869;C9E1J2;C8ZLD6;C8XTN0;C8XTM9;C8XTM3;C8XTM2;C8XTK4;C8XT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"HLA class II histocompatibility antigen, DRB1-15 beta chain;HLA class II histocompatibility antigen, DRB1-3 chain;HLA class II histocompatibility antigen, DRB1-13 beta chain;HLA class II histocompatibility antigen, DRB1-10 beta chain;HLA class II histocompatibility antigen, DRB1-12 beta chain" "HLA-DRB1;HLA-DR15;HLA-DRB1*;HLA-DRB1*1327;MHC class II HLA-DRB1 Exon-2;DRB1*13PL;MHC class II HLA-DRB1*1315;HLA-DRB1*1324;HLA-DR3;HLA-C;HLA-DRB3;HLA-DRB1*1302Var;HLA DRB1;MHC class II HLA DRB1-0305;HLA-DR;HLA-DQB1;HLA-DRB;HLA-A;HLA-DR08;HLA-D;HLA-DRB4;DRB1;HLA-DRB5;HLA DRB1*1202;DRB1*08;HLA-DPB1;DPB1;HLA-DR10;HLA-DR4I;HLA-DRB2;HLA-DR-beta1;HLA-DRw12" ";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;" 1834 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 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"169340;169341;169342;169343;169344;169345;169346;169347;169348;239328;239329;239330;239331;239332;239333;239334;239335;239336;239337;239338;240697;240698;240699;240700;240701;240702;240703;240704;240705;240706;240707;240708;240709;240710;240711;240712;240713;240714;240715;240716;240717;240718;240719;240720;240721;240722;240723;240724;240725;240726;240727;240728;240729;240730;240731;240732;240733;240734;240735;240736;240737;240738;480590;480591;480592;480593;480594;480595;576079;576080;576081;576082;576083;576084;576085;576086;576087;614368;614369;614370;614371;614372;614373;614374;619570;619571;641704;677882;677883;677884;677885;729736;729737;729738;729739;729740;729741;729742;729743;729744;845300;1096058" "79441;79442;79443;79444;79445;114007;114470;222522;269523;269524;269525;286388;288334;298428;315545;339722;392871;505587" "79444;114007;114470;222522;269524;286388;288334;298428;315545;339722;392871;505587" 3 1804 +""" + file_path = write_test_data( + data=TEST_DATA, directory=tmp_path, test_case_name=TEST_FILE_NAME + ) + reference = get_local_reference_data(test_case_name=TEST_FILE_NAME) + + return file_path, reference + + +@pytest.fixture(scope="function") +def example_spectronaut_tsv(tmp_path) -> Path: + """Get and parse real spectronaut protein group report matrix (pivot report).""" + TEST_FILE_NAME = "pg_spectronaut_18.0.tsv" + TEST_DATA = """PG.Genes PG.Organisms PG.ProteinNames PTM.CollapseKey PTM.FlankingRegion PTM.ModificationTitle PTM.Multiplicity PTM.ProteinId PTM.SiteAA PTM.SiteLocation [1] 20180815_QE3_nLC3_AH_DIA_Honly_ind_01.raw.PTM.Quantity [2] 20180815_QE3_nLC3_AH_DIA_Honly_ind_02.raw.PTM.Quantity [3] 20180815_QE3_nLC3_AH_DIA_Honly_ind_03.raw.PTM.Quantity [4] 20180815_QE3_nLC3_AH_DIA_Yonly_ind_01.raw.PTM.Quantity [5] 20180815_QE3_nLC3_AH_DIA_Yonly_ind_02.raw.PTM.Quantity [6] 20180815_QE3_nLC3_AH_DIA_Yonly_ind_03.raw.PTM.Quantity [7] 20180816_QE3_nLC3_AH_DIA_H100_Y100_01.raw.PTM.Quantity [8] 20180816_QE3_nLC3_AH_DIA_H100_Y100_02.raw.PTM.Quantity [9] 20180816_QE3_nLC3_AH_DIA_H100_Y100_03.raw.PTM.Quantity [10] 20180816_QE3_nLC3_AH_DIA_H100_Y100_04.raw.PTM.Quantity [11] 20180816_QE3_nLC3_AH_DIA_H100_Y100_05.raw.PTM.Quantity [12] 20180816_QE3_nLC3_AH_DIA_H100_Y100_06.raw.PTM.Quantity [13] 20180816_QE3_nLC3_AH_DIA_H100_Y150_01.raw.PTM.Quantity [14] 20180816_QE3_nLC3_AH_DIA_H100_Y150_02.raw.PTM.Quantity [15] 20180816_QE3_nLC3_AH_DIA_H100_Y150_03.raw.PTM.Quantity [16] 20180816_QE3_nLC3_AH_DIA_H100_Y150_04.raw.PTM.Quantity [17] 20180816_QE3_nLC3_AH_DIA_H100_Y150_05.raw.PTM.Quantity [18] 20180816_QE3_nLC3_AH_DIA_H100_Y150_06.raw.PTM.Quantity [19] 20180816_QE3_nLC3_AH_DIA_H100_Y200_01.raw.PTM.Quantity [20] 20180816_QE3_nLC3_AH_DIA_H100_Y200_02.raw.PTM.Quantity [21] 20180816_QE3_nLC3_AH_DIA_H100_Y200_03.raw.PTM.Quantity [22] 20180816_QE3_nLC3_AH_DIA_H100_Y200_04.raw.PTM.Quantity [23] 20180816_QE3_nLC3_AH_DIA_H100_Y200_05.raw.PTM.Quantity [24] 20180816_QE3_nLC3_AH_DIA_H100_Y200_06.raw.PTM.Quantity [25] 20180816_QE3_nLC3_AH_DIA_H100_Y25_01.raw.PTM.Quantity [26] 20180816_QE3_nLC3_AH_DIA_H100_Y25_02.raw.PTM.Quantity [27] 20180816_QE3_nLC3_AH_DIA_H100_Y25_03.raw.PTM.Quantity [28] 20180816_QE3_nLC3_AH_DIA_H100_Y25_04.raw.PTM.Quantity [29] 20180816_QE3_nLC3_AH_DIA_H100_Y25_05.raw.PTM.Quantity [30] 20180816_QE3_nLC3_AH_DIA_H100_Y25_06.raw.PTM.Quantity [31] 20180816_QE3_nLC3_AH_DIA_H100_Y50_01.raw.PTM.Quantity [32] 20180816_QE3_nLC3_AH_DIA_H100_Y50_02.raw.PTM.Quantity [33] 20180816_QE3_nLC3_AH_DIA_H100_Y50_03.raw.PTM.Quantity [34] 20180816_QE3_nLC3_AH_DIA_H100_Y50_04.raw.PTM.Quantity [35] 20180816_QE3_nLC3_AH_DIA_H100_Y50_05.raw.PTM.Quantity [36] 20180816_QE3_nLC3_AH_DIA_H100_Y50_06.raw.PTM.Quantity +TRBV19;TRB Homo sapiens TVB19_HUMAN;TRBR1_HUMAN A0A075B6N1_S86_M3 IAEGYSVSREKKESF Phospho (STY) 3 A0A075B6N1 S 86 Filtered Filtered Filtered Filtered Filtered Filtered 89374.65625 Filtered 90181.578125 96197.0703125 89868.4375 88778.9453125 75351.0234375 80948.8515625 80663.4296875 84789.296875 79565.1875 76369.9921875 76147.9609375 75591.015625 75025.4609375 73621.09375 70005.9140625 71209.375 111330.484375 89729.921875 69968.8359375 103632.6015625 90488.9296875 113429.859375 96970.2734375 61069.171875 99673.2734375 109199.875 112307.4765625 112374.84375 +TRBV19;TRB Homo sapiens TVB19_HUMAN;TRBR1_HUMAN A0A075B6N1_S84_M3 GDIAEGYSVSREKKE Phospho (STY) 3 A0A075B6N1 S 84 Filtered Filtered Filtered Filtered Filtered Filtered 89374.65625 Filtered 90181.578125 96197.0703125 89868.4375 88778.9453125 75351.0234375 80948.8515625 80663.4296875 84789.296875 79565.1875 76369.9921875 76147.9609375 75591.015625 75025.4609375 73621.09375 70005.9140625 71209.375 111330.484375 89729.921875 69968.8359375 103632.6015625 90488.9296875 113429.859375 96970.2734375 61069.171875 99673.2734375 109199.875 112307.4765625 112374.84375 +TRBV19;TRB Homo sapiens TVB19_HUMAN;TRBR1_HUMAN A0A075B6N1_Y83_M3 KGDIAEGYSVSREKK Phospho (STY) 3 A0A075B6N1 Y 83 Filtered Filtered Filtered Filtered Filtered Filtered 89374.65625 Filtered 90181.578125 96197.0703125 89868.4375 88778.9453125 75351.0234375 80948.8515625 80663.4296875 84789.296875 79565.1875 76369.9921875 76147.9609375 75591.015625 75025.4609375 73621.09375 70005.9140625 71209.375 111330.484375 89729.921875 69968.8359375 103632.6015625 90488.9296875 113429.859375 96970.2734375 61069.171875 99673.2734375 109199.875 112307.4765625 112374.84375 +TRBV19;TRB Homo sapiens TVB19_HUMAN;TRBR1_HUMAN P0DSE2_S86_M3 IAEGYSVSREKKESF Phospho (STY) 3 P0DSE2 S 86 Filtered Filtered Filtered Filtered Filtered Filtered 89374.65625 Filtered 90181.578125 96197.0703125 89868.4375 88778.9453125 75351.0234375 80948.8515625 80663.4296875 84789.296875 79565.1875 76369.9921875 76147.9609375 75591.015625 75025.4609375 73621.09375 70005.9140625 71209.375 111330.484375 89729.921875 69968.8359375 103632.6015625 90488.9296875 113429.859375 96970.2734375 61069.171875 99673.2734375 109199.875 112307.4765625 112374.84375 +TRBV19;TRB Homo sapiens TVB19_HUMAN;TRBR1_HUMAN P0DSE2_S84_M3 GDIAEGYSVSREKKE Phospho (STY) 3 P0DSE2 S 84 Filtered Filtered Filtered Filtered Filtered Filtered 89374.65625 Filtered 90181.578125 96197.0703125 89868.4375 88778.9453125 75351.0234375 80948.8515625 80663.4296875 84789.296875 79565.1875 76369.9921875 76147.9609375 75591.015625 75025.4609375 73621.09375 70005.9140625 71209.375 111330.484375 89729.921875 69968.8359375 103632.6015625 90488.9296875 113429.859375 96970.2734375 61069.171875 99673.2734375 109199.875 112307.4765625 112374.84375 +TRBV19;TRB Homo sapiens TVB19_HUMAN;TRBR1_HUMAN P0DSE2_Y83_M3 KGDIAEGYSVSREKK Phospho (STY) 3 P0DSE2 Y 83 Filtered Filtered Filtered Filtered Filtered Filtered 89374.65625 Filtered 90181.578125 96197.0703125 89868.4375 88778.9453125 75351.0234375 80948.8515625 80663.4296875 84789.296875 79565.1875 76369.9921875 76147.9609375 75591.015625 75025.4609375 73621.09375 70005.9140625 71209.375 111330.484375 89729.921875 69968.8359375 103632.6015625 90488.9296875 113429.859375 96970.2734375 61069.171875 99673.2734375 109199.875 112307.4765625 112374.84375 +RAMACL;RAMAC Homo sapiens RMACL_HUMAN;RAMAC_HUMAN A0A3B3IU46_S36_M1 YLKRPPESPPIVEEW Phospho (STY) 1 A0A3B3IU46 S 36 Filtered Filtered Filtered Filtered Filtered Filtered 1200.7196044921875 5300.68896484375 4638.056640625 4712.28076171875 3450.970703125 5380.7333984375 7731.48486328125 6493.57861328125 5718.142578125 6750.22802734375 6919.2783203125 6276.05029296875 5876.96875 8595.048828125 4630.2802734375 3050.944580078125 Filtered 7158.28369140625 Filtered 4104.6337890625 4239.0849609375 3748.393798828125 2717.6083984375 5581.71435546875 1382.2950439453125 7370.5205078125 5632.4931640625 5181.73046875 4633.93701171875 4836.95556640625 +RAMACL;RAMAC Homo sapiens RMACL_HUMAN;RAMAC_HUMAN Q9BTL3_S36_M1 YLKRPPESPPIVEEW Phospho (STY) 1 Q9BTL3 S 36 Filtered Filtered Filtered Filtered Filtered Filtered 1200.7196044921875 5300.68896484375 4638.056640625 4712.28076171875 3450.970703125 5380.7333984375 7731.48486328125 6493.57861328125 5718.142578125 6750.22802734375 6919.2783203125 6276.05029296875 5876.96875 8595.048828125 4630.2802734375 3050.944580078125 Filtered 7158.28369140625 Filtered 4104.6337890625 4239.0849609375 3748.393798828125 2717.6083984375 5581.71435546875 1382.2950439453125 7370.5205078125 5632.4931640625 5181.73046875 4633.93701171875 4836.95556640625 +""" + file_path = write_test_data( + data=TEST_DATA, directory=tmp_path, test_case_name=TEST_FILE_NAME + ) + reference = get_local_reference_data(test_case_name=TEST_FILE_NAME) + + return file_path, reference + + +@pytest.fixture(scope="function") +def example_spectronaut_parquet(tmp_path) -> Path: + """Get and parse real spectronaut protein group report matrix (pivot report) in parquet format.""" + URL = "https://datashare.biochem.mpg.de/s/W5ZgzVymP2qDSca" + REF_URL = "https://datashare.biochem.mpg.de/s/nhxU8NZXQt35BWw" + + return get_remote_data_with_ref(url=URL, ref_url=REF_URL, directory=tmp_path) + + +@pytest.fixture(scope="function") +def example_fragpipe_tsv(tmp_path) -> Path: + """Get and parse real FragPipe protein group report matrix (protein.tsv).""" + TEST_FILE_NAME = "pg_fragpipe" + TEST_DATA = """Protein Group SubGroup Protein Protein ID Entry Name Gene Names Protein Length Coverage Organism Protein Existence Description Protein Probability Top Peptide Probability Unique Stripped Peptides Summarized Total Spectral Count Summarized Unique Spectral Count S1 Razor Intensity S2 Razor Intensity S3 Razor Intensity S4 Razor Intensity S5 Razor Intensity S6 Razor Intensity S7 Razor Intensity S8 Razor Intensity S9 Razor Intensity S10 Razor Intensity S11 Razor Intensity S12 Razor Intensity S13 Razor Intensity S14 Razor Intensity S15 Razor Intensity S16 Razor Intensity S17 Razor Intensity S18 Razor Intensity S19 Razor Intensity S20 Razor Intensity +679 a sp|P02790|HEMO_HUMAN P02790 HEMO_HUMAN HPX 462 82.9 Homo sapiens OX=9606 1:Experimental evidence at protein level Hemopexin 1.0 0.9990000000000001 95 25026 25025 2216637.5 2295583.8 1240315.4 106460.28 1019385.2 2596973.0 3091005.2 2327599.5 2323380.0 3109355.8 2113776.8 2301295.2 2451093.5 142603.97 946154.75 3126271.8 2970801.5 2399545.8 3020956.8 3691187.2 +680 a sp|P02792|FRIL_HUMAN P02792 FRIL_HUMAN FTL 175 40.6 Homo sapiens OX=9606 1:Experimental evidence at protein level Ferritin light chain 1.0 0.9990000000000001 18 69 67 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +681 a sp|P02794|FRIH_HUMAN P02794 FRIH_HUMAN FTH1 183 53.6 Homo sapiens OX=9606 1:Experimental evidence at protein level Ferritin heavy chain 1.0 0.9990000000000001 15 15 15 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +682 a sp|P03951|FA11_HUMAN P03951 FA11_HUMAN F11 625 20.2 Homo sapiens OX=9606 1:Experimental evidence at protein level Coagulation factor XI 1.0 0.9990000000000001 11 18 18 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +683 a sp|P03952|KLKB1_HUMAN P03952 KLKB1_HUMAN KLKB1 638 41.7 Homo sapiens OX=9606 1:Experimental evidence at protein level Plasma kallikrein 1.0 0.9990000000000001 23 1022 1022 0.0 85066.71 0.0 0.0 74640.38 118894.164 111398.06 59677.086 45627.31200000001 36386.727 38690.133 70755.9 70384.055 102087.5 106722.82 102985.125 99397.76 45197.56 54068.883 45319.242 +684 a sp|P04003|C4BPA_HUMAN P04003 C4BPA_HUMAN C4BPA 597 40.2 Homo sapiens OX=9606 1:Experimental evidence at protein level C4b-binding protein alpha chain 1.0 0.9990000000000001 26 1645 1645 0.0 0.0 0.0 0.0 0.0 112257.234 30634.523 112197.33 107021.34 95892.05 100655.766 77396.234 78481.19 0.0 0.0 0.0 55184.43 25498.191000000006 43999.35 32183.307 +685 a sp|P04004|VTNC_HUMAN P04004 VTNC_HUMAN VTN 478 51.0 Homo sapiens OX=9606 1:Experimental evidence at protein level Vitronectin 1.0 0.9990000000000001 41 10829 10812 426109.1 531158.4 280231.38 972440.7 925719.9 1446606.2 841194.25 850832.94 911400.2 461015.6 349032.28 877507.94 1113970.9 980389.94 1374961.0 1188514.5 870155.6 1299377.1 1360895.5 614073.56 +686 a sp|P04040|CATA_HUMAN P04040 CATA_HUMAN CAT 527 43.8 Homo sapiens 1:Experimental evidence at protein level Catalase 1.0 0.9990000000000001 18 23 23 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +687 a sp|P04070|PROC_HUMAN P04070 PROC_HUMAN PROC 461 43.4 Homo sapiens OX=9606 1:Experimental evidence at protein level Vitamin K-dependent protein C 1.0 0.9990000000000001 15 65 65 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 39016.97 0.0 0.0 0.0 +688 a sp|P04114|APOB_HUMAN P04114 APOB_HUMAN APOB 4563 75.5 Homo sapiens OX=9606 1:Experimental evidence at protein level Apolipoprotein B-100 1.0 0.9990000000000001 573 103725 103716 603013.44 923688.06 591751.25 491850.03 397211.94 506224.94 319749.8 263752.28 390402.94 443494.1 498007.12 230024.48 265819.75 687710.9 762252.1 422017.75 1020169.75 196046.12 318726.28 480642.72 +""" + + file_path = write_test_data( + data=TEST_DATA, directory=tmp_path, test_case_name=TEST_FILE_NAME + ) + reference = get_local_reference_data(test_case_name=TEST_FILE_NAME) + + return file_path, reference + + +@pytest.fixture(scope="function") +def example_mztab(tmp_path) -> Path: + """Get and parse real MZTab report""" + URL = "https://datashare.biochem.mpg.de/s/ayieQHU9zjY89cl" + REF_URL = "https://datashare.biochem.mpg.de/s/o7K2FEAmpmLUglS" + + return get_remote_data_with_ref(url=URL, ref_url=REF_URL, directory=tmp_path) + + +@pytest.fixture(scope="function") +def example_mztab_minimal(tmp_path) -> Path: + """Get and parse minimal MZTab report for local testing""" + TEST_FILE_NAME = "pg_mztab_minimal" + TEST_DATA = """COM Only variable modifications can be reported when the original source is a PRIDE XML file + +PRH accession description taxid species database database_version search_engine best_search_engine_score[1] search_engine_score[1]_ms_run[1] num_psms_ms_run[1] num_peptides_distinct_ms_run[1] num_peptides_unique_ms_run[1] ambiguity_members modifications protein_coverage protein_abundance_assay[1] protein_abundance_assay[2] protein_abundance_assay[3] protein_abundance_assay[4] +PRT 223462890 Spna2 protein [Mus musculus] 10090 Mus musculus (Mouse) NCBInr_2010_10 nr_101020.fasta [MS, MS:1001207, Mascot, ] 6539.67 6539.67 157 92 null null null 0 1 0.853 0.864 0.791 +PRT 19855078 RecName: Full=Sodium/potassium-transporting ATPase subunit alpha-3; Short=Na(+)/K(+) ATPase alpha-3 subunit; AltName: Full=Na(+)/K(+) ATPase alpha(III) subunit; AltName: Full=Sodium pump subunit alpha-3 10090 Mus musculus (Mouse) NCBInr_2010_10 nr_101020.fasta [MS, MS:1001207, Mascot, ] 6331.91 6331.91 144 49 null null 32-MOD:00425,525-MOD:00425,606-MOD:00425,725-MOD:00425,739-MOD:00425,940-MOD:00425 0 null null null null +PRT 21450277 sodium/potassium-transporting ATPase subunit alpha-1 precursor [Mus musculus] 10090 Mus musculus (Mouse) NCBInr_2010_10 nr_101020.fasta [MS, MS:1001207, Mascot, ] 4577.11 4577.11 112 39 null null 42-MOD:00425,616-MOD:00425,749-MOD:00425,950-MOD:00425 0 1 0.776 0.819 0.687 +PRT 6978545 sodium/potassium-transporting ATPase subunit alpha-2 precursor [Rattus norvegicus] 10090 Mus musculus (Mouse) NCBInr_2010_10 nr_101020.fasta [MS, MS:1001207, Mascot, ] 4342.81 4342.81 108 42 null null 40-MOD:00425,613-MOD:00425,746-MOD:00425,947-MOD:00425 0 1 0.784 0.848 0.693 + """ + file_path = write_test_data( + data=TEST_DATA, directory=tmp_path, test_case_name=TEST_FILE_NAME + ) + reference = get_local_reference_data(test_case_name=TEST_FILE_NAME) + + return file_path, reference diff --git a/tests/integration/reference_data/reference_pg_fragpipe.parquet b/tests/integration/reference_data/reference_pg_fragpipe.parquet new file mode 100644 index 00000000..e7751798 Binary files /dev/null and b/tests/integration/reference_data/reference_pg_fragpipe.parquet differ diff --git a/tests/integration/reference_data/reference_pg_maxquant.2024.tsv.parquet b/tests/integration/reference_data/reference_pg_maxquant.2024.tsv.parquet new file mode 100644 index 00000000..92f55b43 Binary files /dev/null and b/tests/integration/reference_data/reference_pg_maxquant.2024.tsv.parquet differ diff --git a/tests/integration/reference_data/reference_pg_mztab_minimal.parquet b/tests/integration/reference_data/reference_pg_mztab_minimal.parquet new file mode 100644 index 00000000..2bd11b55 Binary files /dev/null and b/tests/integration/reference_data/reference_pg_mztab_minimal.parquet differ diff --git a/tests/integration/reference_data/reference_pg_spectronaut_18.0.tsv.parquet b/tests/integration/reference_data/reference_pg_spectronaut_18.0.tsv.parquet new file mode 100644 index 00000000..7afad5c6 Binary files /dev/null and b/tests/integration/reference_data/reference_pg_spectronaut_18.0.tsv.parquet differ diff --git a/tests/integration/test_pg_reader_provider.py b/tests/integration/test_pg_reader_provider.py index 13b47ae3..5d5d1f7a 100644 --- a/tests/integration/test_pg_reader_provider.py +++ b/tests/integration/test_pg_reader_provider.py @@ -4,6 +4,10 @@ AlphaDiaPGReader, AlphaPeptPGReader, DiannPGReader, + FragPipePGReader, + MaxQuantPGReader, + MZTabPGReader, + SpectronautPGReader, pg_reader_provider, ) @@ -30,3 +34,35 @@ def test_reader_provider(self) -> None: reader = pg_reader_provider.get_reader("alphapept") assert isinstance(reader, AlphaPeptPGReader) + + +class TestMaxQuantPGReaderProvider: + def test_reader_provider(self) -> None: + """Test whether reader provider initializes MaxQuant protein group reader correctly.""" + reader = pg_reader_provider.get_reader("maxquant") + + assert isinstance(reader, MaxQuantPGReader) + + +class TestSpectronautPGReaderProvider: + def test_reader_provider(self) -> None: + """Test whether reader provider initializes spectronaut protein group reader correctly.""" + reader = pg_reader_provider.get_reader("spectronaut") + + assert isinstance(reader, SpectronautPGReader) + + +class TestFragPipePGReaderProvider: + def test_reader_provider(self) -> None: + """Test whether reader provider initializes FragPipe protein group reader correctly.""" + reader = pg_reader_provider.get_reader("fragpipe") + + assert isinstance(reader, FragPipePGReader) + + +class TestMZTabPGReaderProvider: + def test_reader_provider(self) -> None: + """Test whether reader provider initializes MZTab protein group reader correctly.""" + reader = pg_reader_provider.get_reader("mztab") + + assert isinstance(reader, MZTabPGReader) diff --git a/tests/integration/test_pg_readers.py b/tests/integration/test_pg_readers.py index b6add300..13875838 100644 --- a/tests/integration/test_pg_readers.py +++ b/tests/integration/test_pg_readers.py @@ -3,7 +3,15 @@ import pandas as pd import pytest -from alphabase.pg_reader import AlphaDiaPGReader, AlphaPeptPGReader, DiannPGReader +from alphabase.pg_reader import ( + AlphaDiaPGReader, + AlphaPeptPGReader, + DiannPGReader, + FragPipePGReader, + MaxQuantPGReader, + MZTabPGReader, + SpectronautPGReader, +) from alphabase.pg_reader.keys import PGCols @@ -137,3 +145,89 @@ def test_import_hdf_file( PGCols.SOURCE_DB, PGCols.DECOY_INDICATOR, ] + + +class TestMaxQuantPGReader: + def test_import(self, example_maxquant_tsv: str) -> None: + """Test import of real MaxQuant file""" + file_path, reference = example_maxquant_tsv + + reader = MaxQuantPGReader() + result_df = reader.import_file(file_path=file_path) + + pd.testing.assert_frame_equal(result_df, reference) + + @pytest.mark.parametrize(("measurement_regex",), [("raw",), ("lfq",)]) + def test_measurement_regex( + self, example_maxquant_tsv: tuple[str, pd.DataFrame], measurement_regex: str + ) -> None: + """Test import with different regular expressions""" + file_path, _ = example_maxquant_tsv + + reader = MaxQuantPGReader(measurement_regex=measurement_regex) + + result_df = reader.import_file(file_path=file_path) + + assert result_df.shape == (9, 312) + assert result_df.index.names == [ + PGCols.PROTEINS, + PGCols.UNIPROT_IDS, + PGCols.GENES, + PGCols.DECOY_INDICATOR, + ] + + +class TestSpectronautPGReader: + def test_import_real_file_tsv(self, example_spectronaut_tsv: str) -> None: + """Test import of real spectronaut file""" + file_path, reference = example_spectronaut_tsv + + reader = SpectronautPGReader() + + result_df = reader.import_file(file_path=file_path) + + pd.testing.assert_frame_equal(result_df, reference) + + def test_import_real_file_parqet(self, example_spectronaut_parquet: str) -> None: + """Test import of real spectronaut file""" + file_path, reference = example_spectronaut_parquet + + reader = SpectronautPGReader() + + result_df = reader.import_file(file_path=file_path) + + pd.testing.assert_frame_equal(result_df, reference) + + +class TestFragPipePGReader: + def test_import_real_file(self, example_fragpipe_tsv: str) -> None: + """Test import of real FragPipe file""" + file_path, reference = example_fragpipe_tsv + + reader = FragPipePGReader() + + result_df = reader.import_file(file_path=file_path) + + pd.testing.assert_frame_equal(result_df, reference) + + +class TestMZTabPGReader: + def test_import_real_file(self, example_mztab: str) -> None: + """Test import of real MZTab file""" + file_path, reference = example_mztab + + reader = MZTabPGReader() + + result_df = reader.import_file(file_path=file_path) + + pd.testing.assert_frame_equal(result_df, reference) + + def test_import_minimal_example(self, example_mztab_minimal: str) -> None: + """Test import of minimal example MZTab file""" + file_path, reference = example_mztab_minimal + + reader = MZTabPGReader() + + result_df = reader.import_file(file_path=file_path) + + pd.testing.assert_frame_equal(result_df, reference)