Bump lodash from 4.17.23 to 4.18.1 in /packages/client #24
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| name: precisionFDA | |
| on: | |
| push: | |
| branches: | |
| - "master" | |
| pull_request: | |
| branches: | |
| - "*" | |
| jobs: | |
| # Prepopulates ruby cache | |
| # This is because of behaviour of github actions | |
| # When two parallel jobs attempt to write same set of deps into cache | |
| # It causes following error | |
| # Unable to reserve cache with key setup-ruby-bundler-cache-v3-ubuntu-20.04-ruby-2.7.5-Gemfile.lock-e82dcaca5ba83e867a2506d159bec55cc14ba20a0d7df00850b22a1f25d364ba, another job may be creating this cache. | |
| # Example run: https://github.com/dnanexus/precision-fda/runs/5841042836?check_suite_focus=true | |
| # Every job that uses ruby dependencies should wait for this job first | |
| # needs: [ruby-setup] | |
| ruby-setup: | |
| name: Setup Ruby | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Ruby | |
| uses: ruby/setup-ruby@v1 | |
| with: | |
| working-directory: ./packages/rails | |
| bundler-cache: true | |
| cache-version: 1 | |
| static-analysis-master: | |
| if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/master' }} | |
| name: Static Analysis for Master | |
| runs-on: ubuntu-latest | |
| env: | |
| MAKE: "make --jobs 4" | |
| needs: [ruby-setup] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Ruby | |
| uses: ruby/setup-ruby@v1 | |
| with: | |
| working-directory: ./packages/rails | |
| bundler-cache: true | |
| cache-version: 1 | |
| # # Enable this after a global rubocop fix. | |
| # - name: Rubocop | |
| # run: bundle exec rubocop | |
| - name: Brakeman | |
| working-directory: ./packages/rails | |
| run: bundle exec brakeman -A -w2 --parser-timeout 30 | |
| ruby-static-analysis-pr: | |
| if: ${{ github.event_name == 'pull_request' }} | |
| name: Ruby Static Analysis for PR | |
| runs-on: ubuntu-latest | |
| env: | |
| MAKE: "make --jobs 4" | |
| permissions: | |
| contents: read | |
| pull-requests: write | |
| statuses: write | |
| needs: [ruby-setup] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Fetch Git branches | |
| run: git fetch --no-tags --prune origin +refs/heads/*:refs/remotes/origin/* | |
| - name: Setup Ruby | |
| uses: ruby/setup-ruby@v1 | |
| with: | |
| working-directory: ./packages/rails | |
| bundler-cache: true | |
| cache-version: 1 | |
| - name: Rubocop | |
| working-directory: ./packages/rails | |
| run: bundle exec pronto run -f github_status github_pr -c origin/${{ github.base_ref }} | |
| env: | |
| PRONTO_PULL_REQUEST_ID: ${{ github.event.pull_request.number }} | |
| PRONTO_GITHUB_ACCESS_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| BUNDLE_PATH: "vendor/bundle" | |
| - name: Brakeman | |
| working-directory: ./packages/rails | |
| run: bundle exec pronto run -f github_status github_pr -c origin/${{ github.base_ref }} -r brakeman | |
| env: | |
| PRONTO_PULL_REQUEST_ID: ${{ github.event.pull_request.number }} | |
| PRONTO_GITHUB_ACCESS_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| BUNDLE_PATH: "vendor/bundle" | |
| node-static-analysis-pr: | |
| name: Node Static Analysis for PR | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| pull-requests: write | |
| statuses: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: 24.13.1 | |
| - name: Setup pnpm | |
| run: | | |
| corepack enable | |
| corepack prepare pnpm@10.29.3 --activate | |
| - name: Install modules | |
| run: pnpm install | |
| - name: Get changed files (server) | |
| id: changed-server | |
| uses: tj-actions/changed-files@2f7c5bfce28377bc069a65ba478de0a74aa0ca32 #v46.0.1 | |
| with: | |
| files: | | |
| packages/server/apps/**/*.ts | |
| packages/server/libs/**/*.ts | |
| - name: Run Biome CI on changed files (server) | |
| if: steps.changed-server.outputs.any_changed == 'true' | |
| working-directory: packages/server | |
| shell: bash | |
| run: | | |
| FILES_TO_CHECK=(${FILES//packages\/server\//}) | |
| pnpm exec biome ci "${FILES_TO_CHECK[@]}" | |
| env: | |
| FILES: ${{ steps.changed-server.outputs.all_changed_files }} | |
| - name: Get changed files (client) | |
| id: changed-client | |
| uses: tj-actions/changed-files@2f7c5bfce28377bc069a65ba478de0a74aa0ca32 #v46.0.1 | |
| with: | |
| files: | | |
| packages/client/src/**/*.ts | |
| packages/client/src/**/*.tsx | |
| - name: Run Biome CI on changed files (client) | |
| if: steps.changed-client.outputs.any_changed == 'true' | |
| working-directory: packages/client | |
| shell: bash | |
| run: | | |
| FILES_TO_CHECK=(${FILES//packages\/client\//}) | |
| pnpm exec biome ci "${FILES_TO_CHECK[@]}" | |
| env: | |
| FILES: ${{ steps.changed-client.outputs.all_changed_files }} | |
| test-ruby: | |
| name: Test Ruby | |
| runs-on: ubuntu-latest | |
| env: | |
| MAKE: "make --jobs 4" | |
| services: | |
| mysql: | |
| image: mysql:5.7 | |
| ports: | |
| - 3306:3306 | |
| env: | |
| MYSQL_ROOT_PASSWORD: password | |
| needs: [ruby-setup] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Ruby | |
| uses: ruby/setup-ruby@v1 | |
| with: | |
| working-directory: ./packages/rails | |
| bundler-cache: true | |
| cache-version: 1 | |
| - name: Install & Build | |
| working-directory: ./packages/rails | |
| env: | |
| NO_FIPS: 1 | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y cmake libssl-dev nodejs | |
| npm install -g bower | |
| bower install --allow-root | |
| cp config/database.ci.yml config/database.yml | |
| bundle exec rake db:setup | |
| mkdir -p public/packs | |
| touch public/packs/bundle.js | |
| touch public/packs/bundle.css | |
| - name: Test | |
| working-directory: ./packages/rails | |
| env: | |
| NO_FIPS: 1 | |
| RAILS_LOG_TO_STDOUT: 1 | |
| LOG_REQUESTS: 1 | |
| run: bundle exec rspec | |
| test-https-apps: | |
| name: Test HTTPS Apps | |
| runs-on: ubuntu-latest | |
| env: | |
| NODE_ENV: ci_test | |
| DATABASE_TEST_URL: mysql://root:password@127.0.0.1:3306/test_db | |
| DATABASE_TEST_NAME: test_db | |
| SECRET_KEY_BASE: secret | |
| JOB_TOKEN_ENCRYPTION_KEY: supersecret | |
| MAKE: "make --jobs 4" | |
| services: | |
| mysql: | |
| image: mysql:5.7 | |
| ports: | |
| - 3306:3306 | |
| env: | |
| MYSQL_ROOT_PASSWORD: password | |
| redis: | |
| image: redis | |
| ports: | |
| - 6379:6379 | |
| needs: [ruby-setup] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Ruby | |
| uses: ruby/setup-ruby@v1 | |
| with: | |
| working-directory: ./packages/rails | |
| bundler-cache: true | |
| cache-version: 1 | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: 24.13.1 | |
| - name: Setup pnpm | |
| uses: pnpm/action-setup@v3 | |
| with: | |
| version: 10.29.3 | |
| - name: Verify pnpm | |
| run: pnpm -v | |
| - name: Prepare env & DB | |
| working-directory: ./packages/rails | |
| env: | |
| NO_FIPS: 1 | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y cmake libssl-dev | |
| cp config/database.ci.yml config/database.yml | |
| bundle exec rake db:setup | |
| bundle exec rake db:generate_mock_data | |
| bundle exec rake user:generate_test_users | |
| - name: Install Dependencies (Server Only) | |
| working-directory: ./packages/server | |
| run: pnpm install --frozen-lockfile --filter ./packages/server... --prod=false --filter . | |
| - name: Run Tests | |
| working-directory: ./packages/server | |
| run: | | |
| make test-shared | |
| make test-worker | |
| make test-api | |
| make test-admin-platform-client | |
| - name: Test Production Build | |
| working-directory: ./packages/server | |
| run: pnpm run build | |
| - name: Test API Production Start | |
| working-directory: ./packages/server | |
| run: make run-dist ARGS="-- --shutdown" | |
| timeout-minutes: 1 | |
| - name: Test Worker Production Start | |
| working-directory: ./packages/server | |
| run: make run-dist ARGS="-- --shutdown" | |
| timeout-minutes: 1 | |
| test-react-app: | |
| name: Test React app | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: pnpm/action-setup@v3 | |
| with: | |
| version: 10.29.3 | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: "24.13.1" | |
| cache: "pnpm" | |
| - name: Install dependencies | |
| working-directory: ./packages/client | |
| run: pnpm install --frozen-lockfile --prod=false | |
| - name: Install Playwright browsers | |
| working-directory: ./packages/client | |
| run: pnpm exec playwright install chromium --with-deps | |
| - name: Test | |
| working-directory: ./packages/client | |
| run: pnpm test:run | |
| test-react-app-production: | |
| name: Test React app production build | |
| runs-on: ubuntu-latest | |
| env: | |
| NODE_ENV: production | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: pnpm/action-setup@v3 | |
| with: | |
| version: 10.29.3 | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: "24.13.1" | |
| cache: "pnpm" | |
| - name: Install dependencies | |
| working-directory: ./packages/client | |
| run: pnpm install --frozen-lockfile --prod=false | |
| - name: Build production | |
| working-directory: ./packages/client | |
| run: pnpm run build |