Bump axios from 1.13.2 to 1.13.5 in /packages/server #5

Workflow file for this run

.github/workflows/precisionFDA.yml at 210142d

	name: precisionFDA
	on:
	push:
	branches:
	- "master"
	pull_request:
	branches:
	- "*"

	jobs:
	# Prepopulates ruby cache
	# This is because of behaviour of github actions
	# When two parallel jobs attempt to write same set of deps into cache
	# It causes following error
	# Unable to reserve cache with key setup-ruby-bundler-cache-v3-ubuntu-20.04-ruby-2.7.5-Gemfile.lock-e82dcaca5ba83e867a2506d159bec55cc14ba20a0d7df00850b22a1f25d364ba, another job may be creating this cache.
	# Example run: https://github.com/dnanexus/precision-fda/runs/5841042836?check_suite_focus=true
	# Every job that uses ruby dependencies should wait for this job first
	# needs: [ruby-setup]
	ruby-setup:
	name: Setup Ruby
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Setup Ruby
	uses: ruby/setup-ruby@v1
	with:
	working-directory: ./packages/rails
	bundler-cache: true
	cache-version: 1

	static-analysis-master:
	if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/master' }}
	name: Static Analysis for Master
	runs-on: ubuntu-latest
	env:
	MAKE: "make --jobs 4"
	needs: [ruby-setup]
	steps:
	- uses: actions/checkout@v4

	- name: Setup Ruby
	uses: ruby/setup-ruby@v1
	with:
	working-directory: ./packages/rails
	bundler-cache: true
	cache-version: 1

	# # Enable this after a global rubocop fix.
	# - name: Rubocop
	# run: bundle exec rubocop

	- name: Brakeman
	working-directory: ./packages/rails
	run: bundle exec brakeman -A -w2 --parser-timeout 30

	ruby-static-analysis-pr:
	if: ${{ github.event_name == 'pull_request' }}
	name: Ruby Static Analysis for PR
	runs-on: ubuntu-latest
	env:
	MAKE: "make --jobs 4"
	permissions:
	contents: read
	pull-requests: write
	statuses: write
	needs: [ruby-setup]
	steps:
	- uses: actions/checkout@v4

	- name: Fetch Git branches
	run: git fetch --no-tags --prune origin +refs/heads/:refs/remotes/origin/

	- name: Setup Ruby
	uses: ruby/setup-ruby@v1
	with:
	working-directory: ./packages/rails
	bundler-cache: true
	cache-version: 1

	- name: Rubocop
	working-directory: ./packages/rails
	run: bundle exec pronto run -f github_status github_pr -c origin/${{ github.base_ref }}
	env:
	PRONTO_PULL_REQUEST_ID: ${{ github.event.pull_request.number }}
	PRONTO_GITHUB_ACCESS_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	BUNDLE_PATH: "vendor/bundle"

	- name: Brakeman
	working-directory: ./packages/rails
	run: bundle exec pronto run -f github_status github_pr -c origin/${{ github.base_ref }} -r brakeman
	env:
	PRONTO_PULL_REQUEST_ID: ${{ github.event.pull_request.number }}
	PRONTO_GITHUB_ACCESS_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	BUNDLE_PATH: "vendor/bundle"

	node-static-analysis-pr:
	name: Node Static Analysis for PR
	runs-on: ubuntu-latest
	permissions:
	contents: read
	pull-requests: write
	statuses: write
	steps:
	- uses: actions/checkout@v4

	- uses: actions/setup-node@v4
	with:
	node-version: 20.x

	- name: Setup pnpm
	run: \|
	corepack enable
	corepack prepare pnpm@10.10.0 --activate

	- name: Install modules
	run: pnpm install

	- name: Run eslint on changed files (server)
	uses: tj-actions/eslint-changed-files@74f98653675512158746d3136cd2d9326fbfb6e1 #v25.3.0
	with:
	path: packages/server
	config_path: "./eslint.config.mjs"
	level: "info"
	token: ${{ secrets.GITHUB_TOKEN }}

	- name: Run eslint on changed files (client)
	uses: tj-actions/eslint-changed-files@74f98653675512158746d3136cd2d9326fbfb6e1 #v25.3.0
	with:
	path: packages/client
	config_path: "./eslint.config.mjs"
	level: "info"
	token: ${{ secrets.GITHUB_TOKEN }}

	test-ruby:
	name: Test Ruby
	runs-on: ubuntu-latest
	env:
	MAKE: "make --jobs 4"

	services:
	mysql:
	image: mysql:5.7
	ports:
	- 3306:3306
	env:
	MYSQL_ROOT_PASSWORD: password
	needs: [ruby-setup]
	steps:
	- uses: actions/checkout@v4
	- name: Setup Ruby
	uses: ruby/setup-ruby@v1
	with:
	working-directory: ./packages/rails
	bundler-cache: true
	cache-version: 1

	- name: Install & Build
	working-directory: ./packages/rails
	env:
	NO_FIPS: 1
	run: \|
	sudo apt-get update
	sudo apt-get install -y cmake libssl-dev nodejs
	npm install -g bower
	bower install --allow-root
	cp config/database.ci.yml config/database.yml
	bundle exec rake db:setup
	mkdir -p app/assets/packs
	touch app/assets/packs/bundle.js
	touch app/assets/packs/bundle.css

	- name: Test
	working-directory: ./packages/rails
	env:
	NO_FIPS: 1
	RAILS_LOG_TO_STDOUT: 1
	LOG_REQUESTS: 1
	run: bundle exec rspec

	test-https-apps:
	name: Test HTTPS Apps
	runs-on: ubuntu-latest
	env:
	NODE_ENV: ci_test
	DATABASE_TEST_URL: mysql://root:password@127.0.0.1:3306/test_db
	DATABASE_TEST_NAME: test_db
	SECRET_KEY_BASE: secret
	MAKE: "make --jobs 4"
	services:
	mysql:
	image: mysql:5.7
	ports:
	- 3306:3306
	env:
	MYSQL_ROOT_PASSWORD: password
	redis:
	image: redis
	ports:
	- 6379:6379
	needs: [ ruby-setup ]
	steps:
	- uses: actions/checkout@v4

	- name: Setup Ruby
	uses: ruby/setup-ruby@v1
	with:
	working-directory: ./packages/rails
	bundler-cache: true
	cache-version: 1

	- uses: actions/setup-node@v4
	with:
	node-version: "22.15.0"

	- name: Setup pnpm
	uses: pnpm/action-setup@v3
	with:
	version: 10.10.0

	- name: Verify pnpm
	run: pnpm -v

	- name: Prepare env & DB
	working-directory: ./packages/rails
	env:
	NO_FIPS: 1
	run: \|
	sudo apt-get update
	sudo apt-get install -y cmake libssl-dev
	cp config/database.ci.yml config/database.yml
	bundle exec rake db:setup
	bundle exec rake db:generate_mock_data
	bundle exec rake user:generate_test_users

	- name: Install Dependencies (Server Only)
	working-directory: ./packages/server
	run: pnpm install --frozen-lockfile --filter ./packages/server... --prod=false --filter .

	- name: Run Tests
	working-directory: ./packages/server
	run: \|
	make test-shared
	make test-worker
	make test-api
	make test-admin-platform-client

	- name: Test Production Build
	working-directory: ./packages/server
	run: pnpm run build

	- name: Test API Production Start
	working-directory: ./packages/server
	run: make run-dist ARGS="-- --shutdown"
	timeout-minutes: 1

	- name: Test Worker Production Start
	working-directory: ./packages/server
	run: make run-dist ARGS="-- --shutdown"
	timeout-minutes: 1

	test-react-app:
	name: Test React app
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: pnpm/action-setup@v3
	with:
	version: 10.10.0
	- uses: actions/setup-node@v4
	with:
	node-version: "22.15.0"
	cache: "pnpm"
	- name: Install dependencies
	working-directory: ./packages/client
	run: pnpm install --frozen-lockfile --prod=false

	- name: Install Playwright browsers
	working-directory: ./packages/client
	run: pnpm exec playwright install chromium --with-deps

	- name: Test
	working-directory: ./packages/client
	run: pnpm test:run

	test-react-app-production:
	name: Test React app production build
	runs-on: ubuntu-latest
	env:
	NODE_ENV: production
	steps:
	- uses: actions/checkout@v4
	- uses: pnpm/action-setup@v3
	with:
	version: 10.10.0
	- uses: actions/setup-node@v4
	with:
	node-version: "22.15.0"
	cache: "pnpm"
	- name: Install dependencies
	working-directory: ./packages/client
	run: pnpm install --frozen-lockfile --prod=false

	- name: Build production
	working-directory: ./packages/client
	run: pnpm run build

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Bump axios from 1.13.2 to 1.13.5 in /packages/server #5

Workflow file

Bump axios from 1.13.2 to 1.13.5 in /packages/server #5

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Workflow file for this run